Hb_000029_150

Information

Type -
Description -
Location Contig29: 157499-159217
Sequence    

Annotation

kegg
ID rcu:RCOM_1282260
description hypothetical protein
nr
ID XP_002523852.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q949Q5
description Photosystem I subunit O OS=Arabidopsis thaliana GN=PSAO PE=1 SV=1
trembl
ID B9SCY3
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1282260 PE=4 SV=1
Gene Ontology
ID GO:0005739
description photosystem i subunit o

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30358: 157496-158451 , PASA_asmbl_30359: 157730-157858
cDNA
(Sanger)
(ID:Location)		 001_N14.ab1: 157496-158372 , 002_F23.ab1: 157486-158387 , 004_O06.ab1: 157505-158372 , 010_C15.ab1: 157499-158414 , 012_G07.ab1: 157486-158423 , 014_B20.ab1: 158178-158387 , 014_E03.ab1: 157505-158372 , 014_G12.ab1: 157496-158372 , 014_K14.ab1: 157502-158372 , 015_G04.ab1: 157505-158372 , 016_M11.ab1: 157505-158440 , 016_M17.ab1: 157505-158375 , 020_H03.ab1: 157486-158395 , 022_F02.ab1: 157486-158372 , 022_K10.ab1: 157486-158385 , 024_N21.ab1: 157499-158360 , 026_D06.ab1: 157497-158372 , 026_F08.ab1: 157505-158411 , 026_I13.ab1: 157497-158328 , 027_J06.ab1: 157502-158372 , 028_C15.ab1: 157505-158372 , 028_H13.ab1: 157502-158372 , 029_A06.ab1: 157505-158372 , 030_D08.ab1: 157505-158372 , 030_P21.ab1: 157502-158360 , 031_B01.ab1: 157502-158372 , 032_A05.ab1: 157505-158440 , 035_J10.ab1: 157505-158409 , 038_G15.ab1: 157505-158372 , 044_O12.ab1: 157505-158440 , 045_M08.ab1: 157505-158440 , 046_I22.ab1: 157505-158387 , 046_K14.ab1: 157505-158372 , 046_M05.ab1: 157505-158372 , 047_G22.ab1: 157496-158372 , 048_P03.ab1: 157505-158440 , 053_O07.ab1: 157502-158439

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000029_150 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_013405_240 0.0451655622 - - Hydroxyproline-rich glycoprotein family protein [Theobroma cacao]
3 Hb_000243_190 0.0453851494 transcription factor TF Family: MIKC flowering-related B-class MADS-box protein [Vitis vinifera]
4 Hb_007416_250 0.0465337665 - - -
5 Hb_005736_030 0.0490355732 - - thioredoxin m(mitochondrial)-type, putative [Ricinus communis]
6 Hb_132840_050 0.0576145942 - - PREDICTED: protein CURVATURE THYLAKOID 1B, chloroplastic [Jatropha curcas]
7 Hb_013818_020 0.0576288652 - - hypothetical protein POPTR_0005s21070g [Populus trichocarpa]
8 Hb_005483_050 0.058933769 - - conserved hypothetical protein [Ricinus communis]
9 Hb_016334_010 0.059396237 - - hypothetical protein JCGZ_01311 [Jatropha curcas]
10 Hb_000282_110 0.0594707699 transcription factor TF Family: C2C2-GATA hypothetical protein POPTR_0006s24560g [Populus trichocarpa]
11 Hb_010812_030 0.0615717225 - - conserved hypothetical protein [Ricinus communis]
12 Hb_158597_010 0.061971872 - - PREDICTED: serine hydroxymethyltransferase, mitochondrial [Jatropha curcas]
13 Hb_000762_050 0.0638993551 - - PREDICTED: carbonic anhydrase, chloroplastic-like [Jatropha curcas]
14 Hb_000940_060 0.0653447266 - - hypothetical protein POPTR_0009s13250g [Populus trichocarpa]
15 Hb_004116_030 0.0655468156 - - Chlorophyll a-b binding CP29.3, chloroplastic -like protein [Gossypium arboreum]
16 Hb_101097_010 0.0675396642 - - polyprotein [Citrus endogenous pararetrovirus]
17 Hb_003653_030 0.0774426208 - - nucleic acid binding protein, putative [Ricinus communis]
18 Hb_004807_040 0.0780875854 - - PREDICTED: uncharacterized protein LOC104420559 [Eucalyptus grandis]
19 Hb_000003_530 0.0781720677 - - PREDICTED: uncharacterized protein LOC105631554 [Jatropha curcas]
20 Hb_000251_160 0.0788111744 - - chlorophyll A/B binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000029_150 Hb_000029_150 Hb_013405_240 Hb_013405_240 Hb_000029_150--Hb_013405_240 Hb_000243_190 Hb_000243_190 Hb_000029_150--Hb_000243_190 Hb_007416_250 Hb_007416_250 Hb_000029_150--Hb_007416_250 Hb_005736_030 Hb_005736_030 Hb_000029_150--Hb_005736_030 Hb_132840_050 Hb_132840_050 Hb_000029_150--Hb_132840_050 Hb_013818_020 Hb_013818_020 Hb_000029_150--Hb_013818_020 Hb_013405_240--Hb_007416_250 Hb_013405_240--Hb_013818_020 Hb_000282_110 Hb_000282_110 Hb_013405_240--Hb_000282_110 Hb_013405_240--Hb_000243_190 Hb_016334_010 Hb_016334_010 Hb_013405_240--Hb_016334_010 Hb_000243_190--Hb_007416_250 Hb_000243_190--Hb_132840_050 Hb_000940_060 Hb_000940_060 Hb_000243_190--Hb_000940_060 Hb_000243_190--Hb_016334_010 Hb_007416_250--Hb_013818_020 Hb_007416_250--Hb_000282_110 Hb_000762_050 Hb_000762_050 Hb_007416_250--Hb_000762_050 Hb_020805_090 Hb_020805_090 Hb_005736_030--Hb_020805_090 Hb_004712_230 Hb_004712_230 Hb_005736_030--Hb_004712_230 Hb_000629_110 Hb_000629_110 Hb_005736_030--Hb_000629_110 Hb_004631_020 Hb_004631_020 Hb_005736_030--Hb_004631_020 Hb_004807_040 Hb_004807_040 Hb_005736_030--Hb_004807_040 Hb_153106_010 Hb_153106_010 Hb_132840_050--Hb_153106_010 Hb_180007_010 Hb_180007_010 Hb_132840_050--Hb_180007_010 Hb_132840_050--Hb_016334_010 Hb_000251_160 Hb_000251_160 Hb_132840_050--Hb_000251_160 Hb_000825_010 Hb_000825_010 Hb_132840_050--Hb_000825_010 Hb_013818_020--Hb_000282_110 Hb_013818_020--Hb_000762_050 Hb_000003_530 Hb_000003_530 Hb_013818_020--Hb_000003_530 Hb_003208_010 Hb_003208_010 Hb_013818_020--Hb_003208_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.225048 0.393258 66.3147 33.0228 0 0.0486802
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.158086 0.024874 0.0934279 0.397208 284.518

CAGE analysis