Hb_000029_160

Information

Type -
Description -
Location Contig29: 158196-162845
Sequence    

Annotation

kegg
ID rcu:RCOM_1282320
description Nitrilase, putative (EC:3.5.5.1)
nr
ID XP_002523857.1
description Nitrilase, putative [Ricinus communis]
swissprot
ID Q42965
description Bifunctional nitrilase/nitrile hydratase NIT4A OS=Nicotiana tabacum GN=NIT4A PE=2 SV=1
trembl
ID B9SCY8
description Nitrilase, putative OS=Ricinus communis GN=RCOM_1282320 PE=4 SV=1
Gene Ontology
ID GO:0016810
description bifunctional nitrilase nitrile hydratase nit4a

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30360: 158745-158949 , PASA_asmbl_30361: 159314-162807
cDNA
(Sanger)
(ID:Location)		 020_H03r.ab1: 157497-158395 , 022_J18.ab1: 160565-162731 , 030_C12.ab1: 161907-162751 , 032_A05r.ab1: 157505-158440 , 036_P08.ab1: 160484-162731 , 047_P03.ab1: 160498-162758 , 048_P02r.ab1: 157500-158440

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000029_160 0.0 - - Nitrilase, putative [Ricinus communis]
2 Hb_002960_060 0.0757446272 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 28 [Jatropha curcas]
3 Hb_000172_550 0.0761871136 transcription factor TF Family: bZIP PREDICTED: transcription factor TGA1-like [Jatropha curcas]
4 Hb_001975_070 0.0807161032 - - eukaryotic translation elongation factor 1B alpha-subunit [Hevea brasiliensis]
5 Hb_027405_020 0.0849524922 - - PREDICTED: putative E3 ubiquitin-protein ligase XBAT31 [Jatropha curcas]
6 Hb_002078_420 0.0894018097 - - PREDICTED: F-box only protein 6 [Jatropha curcas]
7 Hb_000310_080 0.0901188433 - - hypothetical protein EUTSA_v10023249mg [Eutrema salsugineum]
8 Hb_000076_290 0.1020148368 - - translation factor sui1, putative [Ricinus communis]
9 Hb_005147_110 0.1032310418 - - eukaryotic translation elongation factor 1B gamma-subunit [Hevea brasiliensis]
10 Hb_001009_050 0.1033747166 - - PREDICTED: WD repeat-containing protein 74 isoform X2 [Jatropha curcas]
11 Hb_153150_010 0.103742916 - - PREDICTED: serine/threonine-protein phosphatase PP2A-3 catalytic subunit [Eucalyptus grandis]
12 Hb_000808_180 0.1062986104 - - PREDICTED: pentatricopeptide repeat-containing protein At1g09190 [Jatropha curcas]
13 Hb_000614_080 0.1070853317 - - -
14 Hb_010128_090 0.1073118149 - - PREDICTED: uncharacterized protein LOC105647377 [Jatropha curcas]
15 Hb_005333_020 0.1086521949 - - PREDICTED: protein CutA, chloroplastic [Jatropha curcas]
16 Hb_002270_010 0.1096673264 - - Chaperone protein dnaJ, putative [Ricinus communis]
17 Hb_001157_180 0.1117466912 - - protein binding protein, putative [Ricinus communis]
18 Hb_015401_020 0.1127772442 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
19 Hb_003020_110 0.1128680327 - - PREDICTED: serine/arginine repetitive matrix protein 1 isoform X2 [Populus euphratica]
20 Hb_005314_010 0.1143674981 - - nucleotide binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000029_160 Hb_000029_160 Hb_002960_060 Hb_002960_060 Hb_000029_160--Hb_002960_060 Hb_000172_550 Hb_000172_550 Hb_000029_160--Hb_000172_550 Hb_001975_070 Hb_001975_070 Hb_000029_160--Hb_001975_070 Hb_027405_020 Hb_027405_020 Hb_000029_160--Hb_027405_020 Hb_002078_420 Hb_002078_420 Hb_000029_160--Hb_002078_420 Hb_000310_080 Hb_000310_080 Hb_000029_160--Hb_000310_080 Hb_002960_060--Hb_001975_070 Hb_005147_110 Hb_005147_110 Hb_002960_060--Hb_005147_110 Hb_002169_010 Hb_002169_010 Hb_002960_060--Hb_002169_010 Hb_004310_060 Hb_004310_060 Hb_002960_060--Hb_004310_060 Hb_000808_180 Hb_000808_180 Hb_002960_060--Hb_000808_180 Hb_000076_290 Hb_000076_290 Hb_000172_550--Hb_000076_290 Hb_004032_350 Hb_004032_350 Hb_000172_550--Hb_004032_350 Hb_002725_070 Hb_002725_070 Hb_000172_550--Hb_002725_070 Hb_002820_040 Hb_002820_040 Hb_000172_550--Hb_002820_040 Hb_005295_040 Hb_005295_040 Hb_000172_550--Hb_005295_040 Hb_001975_070--Hb_005147_110 Hb_001009_050 Hb_001009_050 Hb_001975_070--Hb_001009_050 Hb_001341_030 Hb_001341_030 Hb_001975_070--Hb_001341_030 Hb_000373_270 Hb_000373_270 Hb_001975_070--Hb_000373_270 Hb_003125_060 Hb_003125_060 Hb_027405_020--Hb_003125_060 Hb_003020_110 Hb_003020_110 Hb_027405_020--Hb_003020_110 Hb_027405_020--Hb_000310_080 Hb_027405_020--Hb_000172_550 Hb_023020_060 Hb_023020_060 Hb_027405_020--Hb_023020_060 Hb_002078_420--Hb_000172_550 Hb_000016_280 Hb_000016_280 Hb_002078_420--Hb_000016_280 Hb_013753_010 Hb_013753_010 Hb_002078_420--Hb_013753_010 Hb_000331_480 Hb_000331_480 Hb_002078_420--Hb_000331_480 Hb_002078_420--Hb_000076_290 Hb_000310_080--Hb_003020_110 Hb_010128_090 Hb_010128_090 Hb_000310_080--Hb_010128_090 Hb_000032_320 Hb_000032_320 Hb_000310_080--Hb_000032_320 Hb_000310_080--Hb_000373_270
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1037.4 562.363 73.7361 105.508 850.973 652.537
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
462.581 304.495 287.542 355.658 83.1606

CAGE analysis