Hb_000029_210

Information

Type -
Description -
Location Contig29: 217008-217769
Sequence    

Annotation

kegg
ID rcu:RCOM_0938620
description protein binding protein, putative
nr
ID XP_002519112.1
description protein binding protein, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RZE3
description Protein binding protein, putative OS=Ricinus communis GN=RCOM_0938620 PE=4 SV=1
Gene Ontology
ID GO:0047134
description protein binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000029_210 0.0 - - protein binding protein, putative [Ricinus communis]
2 Hb_008518_060 0.0435520538 - - PREDICTED: long chain acyl-CoA synthetase 1 [Jatropha curcas]
3 Hb_005062_100 0.0574264255 - - Ferredoxin-2, chloroplast precursor, putative [Ricinus communis]
4 Hb_001163_010 0.0578383246 - - PREDICTED: syncoilin [Jatropha curcas]
5 Hb_001053_120 0.0579799818 transcription factor TF Family: MYB PREDICTED: transcription factor MYB46-like [Populus euphratica]
6 Hb_001097_030 0.0656294619 - - nuclear transport factor, putative [Ricinus communis]
7 Hb_023342_010 0.0656855657 - - -
8 Hb_000023_100 0.0656934267 - - Mechanosensitive channel of small conductance-like 10 [Theobroma cacao]
9 Hb_010883_160 0.0677004026 - - PREDICTED: pathogenesis-related protein 5 isoform X1 [Jatropha curcas]
10 Hb_002170_030 0.0704163639 - - PREDICTED: laccase-4-like [Jatropha curcas]
11 Hb_009158_040 0.0746679214 - - PREDICTED: auxin-induced protein 15A [Jatropha curcas]
12 Hb_003549_100 0.0758467538 - - PREDICTED: uncharacterized protein LOC105647410 [Jatropha curcas]
13 Hb_001397_020 0.0774095787 - - cytochrome P450 family protein [Populus trichocarpa]
14 Hb_000427_020 0.0838013917 - - PsbA, partial [Dianthus pygmaeus]
15 Hb_000538_110 0.0857246608 - - sucrose synthase 1 [Hevea brasiliensis]
16 Hb_008705_080 0.0896253955 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 14 [Jatropha curcas]
17 Hb_006351_090 0.0904777107 - - UDP-glycosyltransferase 85A1 [Gossypium arboreum]
18 Hb_026198_080 0.0927393985 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 7 [Populus euphratica]
19 Hb_000260_520 0.0974022578 - - receptor protein kinase, putative [Ricinus communis]
20 Hb_029587_010 0.097484969 - - G-type lectin S-receptor-like serine/threonine-protein kinase [Glycine soja]

Gene co-expression network

sample Hb_000029_210 Hb_000029_210 Hb_008518_060 Hb_008518_060 Hb_000029_210--Hb_008518_060 Hb_005062_100 Hb_005062_100 Hb_000029_210--Hb_005062_100 Hb_001163_010 Hb_001163_010 Hb_000029_210--Hb_001163_010 Hb_001053_120 Hb_001053_120 Hb_000029_210--Hb_001053_120 Hb_001097_030 Hb_001097_030 Hb_000029_210--Hb_001097_030 Hb_023342_010 Hb_023342_010 Hb_000029_210--Hb_023342_010 Hb_008518_060--Hb_001053_120 Hb_008518_060--Hb_001163_010 Hb_008518_060--Hb_005062_100 Hb_001397_020 Hb_001397_020 Hb_008518_060--Hb_001397_020 Hb_002170_030 Hb_002170_030 Hb_008518_060--Hb_002170_030 Hb_000023_100 Hb_000023_100 Hb_005062_100--Hb_000023_100 Hb_011362_010 Hb_011362_010 Hb_005062_100--Hb_011362_010 Hb_000260_520 Hb_000260_520 Hb_005062_100--Hb_000260_520 Hb_000739_280 Hb_000739_280 Hb_005062_100--Hb_000739_280 Hb_001163_010--Hb_001053_120 Hb_009158_040 Hb_009158_040 Hb_001163_010--Hb_009158_040 Hb_000427_020 Hb_000427_020 Hb_001163_010--Hb_000427_020 Hb_001163_010--Hb_002170_030 Hb_001053_120--Hb_009158_040 Hb_001053_120--Hb_002170_030 Hb_001053_120--Hb_023342_010 Hb_026198_080 Hb_026198_080 Hb_001053_120--Hb_026198_080 Hb_000538_110 Hb_000538_110 Hb_001097_030--Hb_000538_110 Hb_001097_030--Hb_001163_010 Hb_001097_030--Hb_001053_120 Hb_001097_030--Hb_005062_100 Hb_001097_030--Hb_008518_060 Hb_023342_010--Hb_002170_030 Hb_023342_010--Hb_000023_100 Hb_023342_010--Hb_009158_040 Hb_023342_010--Hb_026198_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.337161 2.12733 10.0712 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.183696 15.4953

CAGE analysis