Hb_000029_220

Information

Type -
Description -
Location Contig29: 221283-223126
Sequence    

Annotation

kegg
ID pop:POPTR_0012s12440g
description POPTRDRAFT_772815; splicing factor-related family protein
nr
ID XP_012085322.1
description PREDICTED: pre-mRNA-splicing factor SLU7-A-like [Jatropha curcas]
swissprot
ID Q9SHY8
description Pre-mRNA-splicing factor SLU7-A OS=Arabidopsis thaliana GN=At1g65660 PE=1 SV=2
trembl
ID A0A067JRF2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17694 PE=4 SV=1
Gene Ontology
ID GO:0005488
description pre-mrna-splicing factor slu7-a-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000029_220 0.0 - - PREDICTED: pre-mRNA-splicing factor SLU7-A-like [Jatropha curcas]
2 Hb_027969_010 0.0645543972 - - hypothetical protein JCGZ_24556 [Jatropha curcas]
3 Hb_024248_010 0.0683339822 - - PREDICTED: uncharacterized protein LOC105779006 [Gossypium raimondii]
4 Hb_005676_020 0.0817009355 transcription factor TF Family: ERF hypothetical protein RCOM_1314900 [Ricinus communis]
5 Hb_001452_150 0.0882992467 - - PREDICTED: uncharacterized protein LOC104879858 [Vitis vinifera]
6 Hb_009826_010 0.0903064371 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
7 Hb_004274_010 0.0925787144 - - PREDICTED: uncharacterized protein LOC104451199 [Eucalyptus grandis]
8 Hb_003427_040 0.0933230456 - - PREDICTED: uncharacterized protein LOC105634770 [Jatropha curcas]
9 Hb_001401_030 0.1112916619 - - PREDICTED: uncharacterized protein LOC105649622 [Jatropha curcas]
10 Hb_116701_030 0.1312165002 - - Pentatricopeptide repeat (PPR-like) superfamily protein [Theobroma cacao]
11 Hb_000914_010 0.13244291 - - hypothetical protein POPTR_0025s00760g [Populus trichocarpa]
12 Hb_051410_010 0.1433233826 - - PREDICTED: uncharacterized protein LOC103401813 [Malus domestica]
13 Hb_094484_010 0.1566986955 - - kinase, putative [Ricinus communis]
14 Hb_000907_050 0.1572728575 - - -
15 Hb_062192_050 0.1588099991 - - -
16 Hb_011476_010 0.1634227856 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
17 Hb_010721_040 0.164874747 transcription factor TF Family: M-type unnamed protein product [Vitis vinifera]
18 Hb_004530_010 0.1676894036 - - PREDICTED: uncharacterized protein LOC104898079 [Beta vulgaris subsp. vulgaris]
19 Hb_004113_030 0.1708651093 - - -
20 Hb_000844_060 0.1823958335 - - PREDICTED: uncharacterized protein LOC105633706 [Jatropha curcas]

Gene co-expression network

sample Hb_000029_220 Hb_000029_220 Hb_027969_010 Hb_027969_010 Hb_000029_220--Hb_027969_010 Hb_024248_010 Hb_024248_010 Hb_000029_220--Hb_024248_010 Hb_005676_020 Hb_005676_020 Hb_000029_220--Hb_005676_020 Hb_001452_150 Hb_001452_150 Hb_000029_220--Hb_001452_150 Hb_009826_010 Hb_009826_010 Hb_000029_220--Hb_009826_010 Hb_004274_010 Hb_004274_010 Hb_000029_220--Hb_004274_010 Hb_027969_010--Hb_005676_020 Hb_027969_010--Hb_024248_010 Hb_004113_030 Hb_004113_030 Hb_027969_010--Hb_004113_030 Hb_116701_030 Hb_116701_030 Hb_027969_010--Hb_116701_030 Hb_001401_030 Hb_001401_030 Hb_027969_010--Hb_001401_030 Hb_024248_010--Hb_001401_030 Hb_024248_010--Hb_005676_020 Hb_024248_010--Hb_009826_010 Hb_003427_040 Hb_003427_040 Hb_024248_010--Hb_003427_040 Hb_024248_010--Hb_001452_150 Hb_005676_020--Hb_001401_030 Hb_000907_050 Hb_000907_050 Hb_005676_020--Hb_000907_050 Hb_062192_050 Hb_062192_050 Hb_005676_020--Hb_062192_050 Hb_001452_150--Hb_003427_040 Hb_001452_150--Hb_009826_010 Hb_001452_150--Hb_004274_010 Hb_011476_010 Hb_011476_010 Hb_001452_150--Hb_011476_010 Hb_009826_010--Hb_003427_040 Hb_009826_010--Hb_004274_010 Hb_009826_010--Hb_001401_030 Hb_004274_010--Hb_003427_040 Hb_004274_010--Hb_011476_010 Hb_004274_010--Hb_024248_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.0385352 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0161718 0.164424

CAGE analysis