Hb_000029_250

Information

Type -
Description -
Location Contig29: 229778-230314
Sequence    

Annotation

kegg
ID rcu:RCOM_0938610
description hypothetical protein
nr
ID XP_002519111.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RZE2
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0938610 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000029_250 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000352_250 0.0004182909 - - -
3 Hb_113631_010 0.0005151896 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
4 Hb_013204_010 0.0007526233 - - hypothetical protein CICLE_v10006597mg [Citrus clementina]
5 Hb_005144_200 0.000991693 - - PREDICTED: uncharacterized protein LOC105642066 [Jatropha curcas]
6 Hb_002400_130 0.0016529291 - - PREDICTED: uncharacterized protein LOC105637626 [Jatropha curcas]
7 Hb_000984_090 0.0021807783 - - -
8 Hb_037949_010 0.0023491455 - - hypothetical protein JCGZ_11175 [Jatropha curcas]
9 Hb_000107_010 0.0027809065 - - -
10 Hb_000000_350 0.0028315458 - - -
11 Hb_005181_100 0.0032380428 - - hypothetical protein POPTR_0010s15550g [Populus trichocarpa]
12 Hb_000696_280 0.0042941734 - - protein phosphatase-2c, putative [Ricinus communis]
13 Hb_187024_010 0.004394033 - - -
14 Hb_007187_020 0.0045534384 - - hypothetical protein POPTR_0001s43680g, partial [Populus trichocarpa]
15 Hb_005211_200 0.0047060137 - - PREDICTED: uncharacterized protein LOC105650390, partial [Jatropha curcas]
16 Hb_004458_020 0.0048179563 - - retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa Japonica Group]
17 Hb_185340_010 0.0048523592 - - Rhicadhesin receptor precursor, putative [Ricinus communis]
18 Hb_068533_010 0.0049013568 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
19 Hb_005673_010 0.0055386407 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
20 Hb_030602_030 0.0056699675 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]

Gene co-expression network

sample Hb_000029_250 Hb_000029_250 Hb_000352_250 Hb_000352_250 Hb_000029_250--Hb_000352_250 Hb_113631_010 Hb_113631_010 Hb_000029_250--Hb_113631_010 Hb_013204_010 Hb_013204_010 Hb_000029_250--Hb_013204_010 Hb_005144_200 Hb_005144_200 Hb_000029_250--Hb_005144_200 Hb_002400_130 Hb_002400_130 Hb_000029_250--Hb_002400_130 Hb_000984_090 Hb_000984_090 Hb_000029_250--Hb_000984_090 Hb_000352_250--Hb_013204_010 Hb_000352_250--Hb_113631_010 Hb_000352_250--Hb_005144_200 Hb_000352_250--Hb_002400_130 Hb_000352_250--Hb_000984_090 Hb_113631_010--Hb_005144_200 Hb_113631_010--Hb_002400_130 Hb_113631_010--Hb_013204_010 Hb_113631_010--Hb_000984_090 Hb_013204_010--Hb_005144_200 Hb_013204_010--Hb_002400_130 Hb_013204_010--Hb_000984_090 Hb_005144_200--Hb_002400_130 Hb_005144_200--Hb_000984_090 Hb_037949_010 Hb_037949_010 Hb_005144_200--Hb_037949_010 Hb_002400_130--Hb_000984_090 Hb_002400_130--Hb_037949_010 Hb_000107_010 Hb_000107_010 Hb_002400_130--Hb_000107_010 Hb_000000_350 Hb_000000_350 Hb_002400_130--Hb_000000_350 Hb_000984_090--Hb_037949_010 Hb_000984_090--Hb_000107_010 Hb_000984_090--Hb_000000_350 Hb_005181_100 Hb_005181_100 Hb_000984_090--Hb_005181_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0528721 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0388478 0

CAGE analysis