Hb_000029_270

Information

Type -
Description -
Location Contig29: 244185-244694
Sequence    

Annotation

kegg
ID pop:POPTR_0009s11370g
description POPTRDRAFT_767492; hypothetical protein
nr
ID XP_012072602.1
description PREDICTED: uncharacterized protein LOC105634361 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LP27
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10044 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000029_270 0.0 - - PREDICTED: uncharacterized protein LOC105634361 [Jatropha curcas]
2 Hb_000123_110 0.1745511853 - - PREDICTED: pentatricopeptide repeat-containing protein At2g39620-like [Pyrus x bretschneideri]
3 Hb_000127_020 0.1873387367 transcription factor TF Family: ERF AP2 domain-containing transcription factor family protein [Populus trichocarpa]
4 Hb_005867_040 0.1953535947 transcription factor TF Family: RWP-RK PREDICTED: protein RKD4 [Jatropha curcas]
5 Hb_010589_110 0.2064305094 - - PREDICTED: pumilio homolog 12-like [Jatropha curcas]
6 Hb_000107_650 0.2180782852 - - PREDICTED: cyclic phosphodiesterase-like [Jatropha curcas]
7 Hb_001766_100 0.2191217494 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
8 Hb_002983_030 0.2212283688 desease resistance Gene Name: NB-ARC hypothetical protein CISIN_1g046124mg, partial [Citrus sinensis]
9 Hb_004522_040 0.2218340171 - - PREDICTED: probable galacturonosyltransferase 9 [Populus euphratica]
10 Hb_000196_090 0.2266700016 - - axonemal dynein light chain, putative [Ricinus communis]
11 Hb_004048_060 0.2330215096 - - hypothetical protein PRUPE_ppa023788mg, partial [Prunus persica]
12 Hb_029223_030 0.2351031664 - - hypothetical protein POPTR_0006s12500g [Populus trichocarpa]
13 Hb_001478_050 0.2357443554 - - PREDICTED: uncharacterized protein LOC105640307 [Jatropha curcas]
14 Hb_001279_130 0.2364943601 - - hypothetical protein L484_017676 [Morus notabilis]
15 Hb_003747_030 0.2377818273 - - PREDICTED: pentatricopeptide repeat-containing protein At3g26630, chloroplastic-like [Jatropha curcas]
16 Hb_010098_070 0.2412421065 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000951_060 0.2436150038 - - mads box protein, putative [Ricinus communis]
18 Hb_096225_020 0.2450038673 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein HAT22-like [Jatropha curcas]
19 Hb_014497_110 0.2450895081 - - PREDICTED: AT-hook motif nuclear-localized protein 25-like [Jatropha curcas]
20 Hb_000032_260 0.2451209611 - - PREDICTED: probable protein phosphatase 2C 51 [Jatropha curcas]

Gene co-expression network

sample Hb_000029_270 Hb_000029_270 Hb_000123_110 Hb_000123_110 Hb_000029_270--Hb_000123_110 Hb_000127_020 Hb_000127_020 Hb_000029_270--Hb_000127_020 Hb_005867_040 Hb_005867_040 Hb_000029_270--Hb_005867_040 Hb_010589_110 Hb_010589_110 Hb_000029_270--Hb_010589_110 Hb_000107_650 Hb_000107_650 Hb_000029_270--Hb_000107_650 Hb_001766_100 Hb_001766_100 Hb_000029_270--Hb_001766_100 Hb_001514_190 Hb_001514_190 Hb_000123_110--Hb_001514_190 Hb_006499_010 Hb_006499_010 Hb_000123_110--Hb_006499_010 Hb_000123_110--Hb_005867_040 Hb_004522_040 Hb_004522_040 Hb_000123_110--Hb_004522_040 Hb_002849_210 Hb_002849_210 Hb_000123_110--Hb_002849_210 Hb_031403_010 Hb_031403_010 Hb_000123_110--Hb_031403_010 Hb_000127_020--Hb_004522_040 Hb_000127_020--Hb_000123_110 Hb_002477_230 Hb_002477_230 Hb_000127_020--Hb_002477_230 Hb_010098_070 Hb_010098_070 Hb_000127_020--Hb_010098_070 Hb_000163_290 Hb_000163_290 Hb_000127_020--Hb_000163_290 Hb_000032_260 Hb_000032_260 Hb_005867_040--Hb_000032_260 Hb_005867_040--Hb_031403_010 Hb_000085_300 Hb_000085_300 Hb_005867_040--Hb_000085_300 Hb_005276_100 Hb_005276_100 Hb_005867_040--Hb_005276_100 Hb_000340_430 Hb_000340_430 Hb_005867_040--Hb_000340_430 Hb_003751_120 Hb_003751_120 Hb_005867_040--Hb_003751_120 Hb_030370_030 Hb_030370_030 Hb_010589_110--Hb_030370_030 Hb_000077_410 Hb_000077_410 Hb_010589_110--Hb_000077_410 Hb_000699_120 Hb_000699_120 Hb_010589_110--Hb_000699_120 Hb_002260_090 Hb_002260_090 Hb_010589_110--Hb_002260_090 Hb_001892_120 Hb_001892_120 Hb_010589_110--Hb_001892_120 Hb_030765_020 Hb_030765_020 Hb_000107_650--Hb_030765_020 Hb_029223_030 Hb_029223_030 Hb_000107_650--Hb_029223_030 Hb_000284_010 Hb_000284_010 Hb_000107_650--Hb_000284_010 Hb_060668_010 Hb_060668_010 Hb_000107_650--Hb_060668_010 Hb_000078_030 Hb_000078_030 Hb_000107_650--Hb_000078_030 Hb_012799_060 Hb_012799_060 Hb_000107_650--Hb_012799_060 Hb_002983_030 Hb_002983_030 Hb_001766_100--Hb_002983_030 Hb_014549_020 Hb_014549_020 Hb_001766_100--Hb_014549_020 Hb_000193_240 Hb_000193_240 Hb_001766_100--Hb_000193_240 Hb_004453_140 Hb_004453_140 Hb_001766_100--Hb_004453_140 Hb_152439_020 Hb_152439_020 Hb_001766_100--Hb_152439_020 Hb_001100_010 Hb_001100_010 Hb_001766_100--Hb_001100_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.24178 0.105098 0 0 0.156763 0.501268
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.389831 1.42925 1.04186 0.466 0

CAGE analysis