Hb_000029_280

Information

Type -
Description -
Location Contig29: 252713-253198
Sequence    

Annotation

kegg
ID rcu:RCOM_0938490
description hypothetical protein
nr
ID XP_012069377.1
description PREDICTED: uncharacterized protein LOC105631804 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LN29
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10045 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000029_280 0.0 - - PREDICTED: uncharacterized protein LOC105631804 [Jatropha curcas]
2 Hb_000668_170 0.1301864776 - - sulfate transporter, putative [Ricinus communis]
3 Hb_005183_010 0.1414431835 - - PREDICTED: probable calcium-binding protein CML17 [Malus domestica]
4 Hb_000087_180 0.148118523 - - conserved hypothetical protein [Ricinus communis]
5 Hb_127628_010 0.1581374748 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
6 Hb_107495_050 0.1671497577 transcription factor TF Family: MIKC mads box protein, putative [Ricinus communis]
7 Hb_187697_010 0.167575524 - - TMV resistance protein N, putative [Ricinus communis]
8 Hb_017434_020 0.1761469468 transcription factor TF Family: C2H2 Zinc finger protein 4 [Populus trichocarpa]
9 Hb_004968_050 0.1806473946 - - PREDICTED: putative lipid-transfer protein DIR1 [Jatropha curcas]
10 Hb_000506_130 0.1822551095 - - DGCR14-related family protein [Populus trichocarpa]
11 Hb_002107_080 0.1843772327 - - JHL20J20.3 [Jatropha curcas]
12 Hb_000796_200 0.1870775446 - - PREDICTED: probable glycerol-3-phosphate acyltransferase 3 [Jatropha curcas]
13 Hb_000506_140 0.187198534 - - hypothetical protein PRUPE_ppb019425mg [Prunus persica]
14 Hb_183539_010 0.189026557 - - hypothetical protein POPTR_0005s04441g [Populus trichocarpa]
15 Hb_000318_320 0.1916030313 - - PREDICTED: transmembrane protein 45B [Jatropha curcas]
16 Hb_083862_010 0.1954992885 - - hypothetical protein JCGZ_17956 [Jatropha curcas]
17 Hb_012423_020 0.1998246178 - - hypothetical protein JCGZ_20730 [Jatropha curcas]
18 Hb_000072_310 0.1999389087 transcription factor TF Family: bZIP PREDICTED: basic leucine zipper 43-like [Jatropha curcas]
19 Hb_010012_020 0.2012633078 - - conserved hypothetical protein [Ricinus communis]
20 Hb_002078_210 0.2014856206 - - PREDICTED: cytochrome P450 78A5-like [Jatropha curcas]

Gene co-expression network

sample Hb_000029_280 Hb_000029_280 Hb_000668_170 Hb_000668_170 Hb_000029_280--Hb_000668_170 Hb_005183_010 Hb_005183_010 Hb_000029_280--Hb_005183_010 Hb_000087_180 Hb_000087_180 Hb_000029_280--Hb_000087_180 Hb_127628_010 Hb_127628_010 Hb_000029_280--Hb_127628_010 Hb_107495_050 Hb_107495_050 Hb_000029_280--Hb_107495_050 Hb_187697_010 Hb_187697_010 Hb_000029_280--Hb_187697_010 Hb_000668_170--Hb_005183_010 Hb_010142_040 Hb_010142_040 Hb_000668_170--Hb_010142_040 Hb_001213_140 Hb_001213_140 Hb_000668_170--Hb_001213_140 Hb_000827_090 Hb_000827_090 Hb_000668_170--Hb_000827_090 Hb_000668_170--Hb_000087_180 Hb_005183_010--Hb_000087_180 Hb_012395_260 Hb_012395_260 Hb_005183_010--Hb_012395_260 Hb_004968_050 Hb_004968_050 Hb_005183_010--Hb_004968_050 Hb_000417_230 Hb_000417_230 Hb_005183_010--Hb_000417_230 Hb_017434_020 Hb_017434_020 Hb_005183_010--Hb_017434_020 Hb_000087_180--Hb_017434_020 Hb_000087_180--Hb_004968_050 Hb_000506_130 Hb_000506_130 Hb_000087_180--Hb_000506_130 Hb_005714_140 Hb_005714_140 Hb_000087_180--Hb_005714_140 Hb_000087_180--Hb_000417_230 Hb_136027_010 Hb_136027_010 Hb_127628_010--Hb_136027_010 Hb_000506_140 Hb_000506_140 Hb_127628_010--Hb_000506_140 Hb_016404_010 Hb_016404_010 Hb_127628_010--Hb_016404_010 Hb_121913_010 Hb_121913_010 Hb_127628_010--Hb_121913_010 Hb_000465_330 Hb_000465_330 Hb_127628_010--Hb_000465_330 Hb_005588_140 Hb_005588_140 Hb_107495_050--Hb_005588_140 Hb_083862_010 Hb_083862_010 Hb_107495_050--Hb_083862_010 Hb_000072_310 Hb_000072_310 Hb_107495_050--Hb_000072_310 Hb_107495_050--Hb_000087_180 Hb_002639_090 Hb_002639_090 Hb_107495_050--Hb_002639_090 Hb_107495_050--Hb_000506_140 Hb_000003_430 Hb_000003_430 Hb_187697_010--Hb_000003_430 Hb_187697_010--Hb_000506_130 Hb_187697_010--Hb_127628_010 Hb_008725_190 Hb_008725_190 Hb_187697_010--Hb_008725_190 Hb_003913_030 Hb_003913_030 Hb_187697_010--Hb_003913_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.62133 157.396 14.8337 79.2107 6.90972 13.5153
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.281357 0.110513 0 0.138207 3.89999

CAGE analysis