Hb_000029_310

Information

Type -
Description -
Location Contig29: 263582-268134
Sequence    

Annotation

kegg
ID rcu:RCOM_0938360
description hypothetical protein
nr
ID XP_012069414.1
description PREDICTED: uncharacterized protein LOC105631832 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9RZD7
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0938360 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000029_310 0.0 - - PREDICTED: uncharacterized protein LOC105631832 isoform X1 [Jatropha curcas]
2 Hb_008173_020 0.1048172978 - - glutathione peroxidase [Populus euphratica]
3 Hb_002685_040 0.1616416219 - - hypothetical protein CICLE_v10017252mg [Citrus clementina]
4 Hb_004032_020 0.1633058496 - - hypothetical protein OsI_04644 [Oryza sativa Indica Group]
5 Hb_112798_030 0.1644297435 - - conserved hypothetical protein [Ricinus communis]
6 Hb_005186_050 0.1667260903 - - PREDICTED: uncharacterized protein LOC105628509 [Jatropha curcas]
7 Hb_003607_150 0.1675644265 - - PREDICTED: thioredoxin-like protein 4B [Jatropha curcas]
8 Hb_001504_100 0.1686625943 - - PREDICTED: uncharacterized protein At2g39795, mitochondrial-like [Jatropha curcas]
9 Hb_003069_010 0.1687431068 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 2-like [Jatropha curcas]
10 Hb_007432_030 0.1688123526 - - acyl-CoA thioesterase, putative [Ricinus communis]
11 Hb_003020_020 0.1694878077 - - PREDICTED: dnaJ homolog subfamily B member 8 isoform X1 [Jatropha curcas]
12 Hb_000270_260 0.1699085282 - - PREDICTED: uncharacterized protein LOC105640466 [Jatropha curcas]
13 Hb_001847_020 0.1715735838 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Eucalyptus grandis]
14 Hb_000926_020 0.1730995343 - - -
15 Hb_000208_120 0.174829815 - - PREDICTED: CAP-Gly domain-containing linker protein 1-like [Jatropha curcas]
16 Hb_001277_070 0.1777811164 - - PREDICTED: guanine nucleotide-binding protein subunit gamma 2 isoform X1 [Jatropha curcas]
17 Hb_003683_120 0.1788508898 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001292_020 0.1806867554 - - PREDICTED: keratin, type II cytoskeletal 5 isoform X1 [Sesamum indicum]
19 Hb_000362_200 0.1812961145 - - exonuclease family protein [Populus trichocarpa]
20 Hb_111985_050 0.1828958573 - - uroporphyrin-III methyltransferase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000029_310 Hb_000029_310 Hb_008173_020 Hb_008173_020 Hb_000029_310--Hb_008173_020 Hb_002685_040 Hb_002685_040 Hb_000029_310--Hb_002685_040 Hb_004032_020 Hb_004032_020 Hb_000029_310--Hb_004032_020 Hb_112798_030 Hb_112798_030 Hb_000029_310--Hb_112798_030 Hb_005186_050 Hb_005186_050 Hb_000029_310--Hb_005186_050 Hb_003607_150 Hb_003607_150 Hb_000029_310--Hb_003607_150 Hb_000270_260 Hb_000270_260 Hb_008173_020--Hb_000270_260 Hb_001847_020 Hb_001847_020 Hb_008173_020--Hb_001847_020 Hb_017904_010 Hb_017904_010 Hb_008173_020--Hb_017904_010 Hb_111985_050 Hb_111985_050 Hb_008173_020--Hb_111985_050 Hb_000362_200 Hb_000362_200 Hb_008173_020--Hb_000362_200 Hb_002685_040--Hb_005186_050 Hb_002685_040--Hb_003607_150 Hb_001832_060 Hb_001832_060 Hb_002685_040--Hb_001832_060 Hb_001662_070 Hb_001662_070 Hb_002685_040--Hb_001662_070 Hb_004195_270 Hb_004195_270 Hb_002685_040--Hb_004195_270 Hb_000622_180 Hb_000622_180 Hb_002685_040--Hb_000622_180 Hb_002454_030 Hb_002454_030 Hb_004032_020--Hb_002454_030 Hb_002232_440 Hb_002232_440 Hb_004032_020--Hb_002232_440 Hb_000608_370 Hb_000608_370 Hb_004032_020--Hb_000608_370 Hb_001277_070 Hb_001277_070 Hb_004032_020--Hb_001277_070 Hb_000025_230 Hb_000025_230 Hb_004032_020--Hb_000025_230 Hb_007575_060 Hb_007575_060 Hb_004032_020--Hb_007575_060 Hb_011571_010 Hb_011571_010 Hb_112798_030--Hb_011571_010 Hb_153112_020 Hb_153112_020 Hb_112798_030--Hb_153112_020 Hb_000331_080 Hb_000331_080 Hb_112798_030--Hb_000331_080 Hb_004931_090 Hb_004931_090 Hb_112798_030--Hb_004931_090 Hb_008878_030 Hb_008878_030 Hb_112798_030--Hb_008878_030 Hb_011224_110 Hb_011224_110 Hb_112798_030--Hb_011224_110 Hb_003069_010 Hb_003069_010 Hb_005186_050--Hb_003069_010 Hb_005186_050--Hb_003607_150 Hb_007154_020 Hb_007154_020 Hb_005186_050--Hb_007154_020 Hb_005186_050--Hb_000362_200 Hb_001512_060 Hb_001512_060 Hb_005186_050--Hb_001512_060 Hb_000251_070 Hb_000251_070 Hb_005186_050--Hb_000251_070 Hb_003607_150--Hb_003069_010 Hb_003607_150--Hb_000251_070 Hb_003607_150--Hb_007154_020 Hb_028841_030 Hb_028841_030 Hb_003607_150--Hb_028841_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.219604 0.0196049 0.113798 0.0231971 0.0727599 0.0482152
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0735377 0.212153 0.145989 0.0383938 0.0813334

CAGE analysis