Hb_000029_320

Information

Type -
Description -
Location Contig29: 273162-278355
Sequence    

Annotation

kegg
ID rcu:RCOM_0938350
description Protein ariadne-1, putative
nr
ID XP_012069442.1
description PREDICTED: probable E3 ubiquitin-protein ligase ARI2 [Jatropha curcas]
swissprot
ID Q949V6
description Probable E3 ubiquitin-protein ligase ARI1 OS=Arabidopsis thaliana GN=ARI1 PE=2 SV=1
trembl
ID A0A067LN38
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10050 PE=4 SV=1
Gene Ontology
ID GO:0004842
description probable e3 ubiquitin-protein ligase ari2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30370: 273404-278079
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000029_320 0.0 - - PREDICTED: probable E3 ubiquitin-protein ligase ARI2 [Jatropha curcas]
2 Hb_002070_070 0.0609978388 - - ATP binding protein, putative [Ricinus communis]
3 Hb_015763_030 0.0631668006 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000209_070 0.0704835794 - - PREDICTED: chloride channel protein CLC-f isoform X1 [Jatropha curcas]
5 Hb_022250_110 0.0715994897 - - PREDICTED: staphylococcal nuclease domain-containing protein 1 [Jatropha curcas]
6 Hb_001473_090 0.0729479061 - - PREDICTED: uncharacterized protein LOC105650374 [Jatropha curcas]
7 Hb_000329_490 0.078783462 - - hypothetical protein JCGZ_14582 [Jatropha curcas]
8 Hb_003436_050 0.0790217964 - - arf gtpase-activating protein, putative [Ricinus communis]
9 Hb_009151_020 0.0813113706 - - PREDICTED: DNA polymerase delta catalytic subunit [Jatropha curcas]
10 Hb_000475_020 0.0835142164 - - PREDICTED: dehydrogenase/reductase SDR family member on chromosome X homolog isoform X2 [Jatropha curcas]
11 Hb_001040_120 0.0854532898 - - allantoinase, putative [Ricinus communis]
12 Hb_003847_120 0.0855062169 - - WD-repeat protein, putative [Ricinus communis]
13 Hb_010180_040 0.0862871595 - - PREDICTED: prosaposin isoform X1 [Jatropha curcas]
14 Hb_000025_650 0.0904885337 - - exosome complex exonuclease rrp45, putative [Ricinus communis]
15 Hb_000347_570 0.0914692913 - - PREDICTED: transcription initiation factor TFIID subunit 12b isoform X1 [Jatropha curcas]
16 Hb_000300_580 0.0920467532 - - PREDICTED: importin-5-like [Jatropha curcas]
17 Hb_004218_240 0.0931148781 - - PREDICTED: DNA-directed RNA polymerase V subunit 1 [Jatropha curcas]
18 Hb_000037_110 0.0933863679 - - PREDICTED: cation/H(+) antiporter 18-like [Populus euphratica]
19 Hb_002903_080 0.0947969174 - - PREDICTED: splicing factor 3B subunit 2 [Jatropha curcas]
20 Hb_000059_150 0.0960355235 - - Polynucleotidyl transferase, ribonuclease H-like superfamily protein isoform 2 [Theobroma cacao]

Gene co-expression network

sample Hb_000029_320 Hb_000029_320 Hb_002070_070 Hb_002070_070 Hb_000029_320--Hb_002070_070 Hb_015763_030 Hb_015763_030 Hb_000029_320--Hb_015763_030 Hb_000209_070 Hb_000209_070 Hb_000029_320--Hb_000209_070 Hb_022250_110 Hb_022250_110 Hb_000029_320--Hb_022250_110 Hb_001473_090 Hb_001473_090 Hb_000029_320--Hb_001473_090 Hb_000329_490 Hb_000329_490 Hb_000029_320--Hb_000329_490 Hb_002070_070--Hb_015763_030 Hb_002070_070--Hb_000329_490 Hb_002070_070--Hb_000209_070 Hb_001040_120 Hb_001040_120 Hb_002070_070--Hb_001040_120 Hb_004218_240 Hb_004218_240 Hb_002070_070--Hb_004218_240 Hb_003464_020 Hb_003464_020 Hb_015763_030--Hb_003464_020 Hb_021409_170 Hb_021409_170 Hb_015763_030--Hb_021409_170 Hb_001085_320 Hb_001085_320 Hb_015763_030--Hb_001085_320 Hb_010180_040 Hb_010180_040 Hb_015763_030--Hb_010180_040 Hb_000209_070--Hb_001473_090 Hb_000209_070--Hb_022250_110 Hb_000160_290 Hb_000160_290 Hb_000209_070--Hb_000160_290 Hb_001675_070 Hb_001675_070 Hb_000209_070--Hb_001675_070 Hb_000209_070--Hb_003464_020 Hb_022250_110--Hb_000329_490 Hb_078477_040 Hb_078477_040 Hb_022250_110--Hb_078477_040 Hb_003018_160 Hb_003018_160 Hb_022250_110--Hb_003018_160 Hb_006002_030 Hb_006002_030 Hb_022250_110--Hb_006002_030 Hb_002749_110 Hb_002749_110 Hb_001473_090--Hb_002749_110 Hb_001178_150 Hb_001178_150 Hb_001473_090--Hb_001178_150 Hb_000347_570 Hb_000347_570 Hb_001473_090--Hb_000347_570 Hb_009151_020 Hb_009151_020 Hb_001473_090--Hb_009151_020 Hb_000785_040 Hb_000785_040 Hb_001473_090--Hb_000785_040 Hb_006114_020 Hb_006114_020 Hb_000329_490--Hb_006114_020 Hb_006882_010 Hb_006882_010 Hb_000329_490--Hb_006882_010 Hb_000300_580 Hb_000300_580 Hb_000329_490--Hb_000300_580
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
21.7624 13.0372 7.82505 13.6396 30.5471 35.1512
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.4177 5.74519 7.01396 8.85712 10.4569

CAGE analysis