Hb_000029_370

Information

Type -
Description -
Location Contig29: 317557-325186
Sequence    

Annotation

kegg
ID rcu:RCOM_0938290
description multidrug resistance pump, putative
nr
ID XP_002519100.1
description multidrug resistance pump, putative [Ricinus communis]
swissprot
ID Q9LYT3
description Protein TRANSPARENT TESTA 12 OS=Arabidopsis thaliana GN=TT12 PE=2 SV=1
trembl
ID B9RZD1
description MATE efflux family protein OS=Ricinus communis GN=RCOM_0938290 PE=3 SV=1
Gene Ontology
ID GO:0016020
description protein transparent testa 12-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30381: 319562-320167
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000029_370 0.0 - - multidrug resistance pump, putative [Ricinus communis]
2 Hb_005237_040 0.1107301249 - - PREDICTED: uncharacterized protein LOC105630923 [Jatropha curcas]
3 Hb_001678_030 0.1247120273 desease resistance Gene Name: TIR PREDICTED: TMV resistance protein N-like [Jatropha curcas]
4 Hb_014037_010 0.1258843617 - - PREDICTED: uncharacterized protein LOC105641871 [Jatropha curcas]
5 Hb_000236_050 0.1271412794 - - phosphate transporter [Manihot esculenta]
6 Hb_002150_010 0.1366548146 - - hypothetical protein POPTR_0001s10240g [Populus trichocarpa]
7 Hb_001221_480 0.1374484943 - - metal ion binding protein, putative [Ricinus communis]
8 Hb_002391_350 0.1397930856 - - PREDICTED: uncharacterized protein LOC105647080 [Jatropha curcas]
9 Hb_000181_160 0.141854379 - - PREDICTED: uncharacterized protein LOC105637575 isoform X2 [Jatropha curcas]
10 Hb_004884_200 0.144215848 - - PREDICTED: ferritin-3, chloroplastic [Jatropha curcas]
11 Hb_000852_050 0.1453858231 - - hypothetical protein POPTR_0018s02450g [Populus trichocarpa]
12 Hb_000237_150 0.145620329 - - Epoxide hydrolase 2 [Morus notabilis]
13 Hb_142332_010 0.1478298975 - - TRANSPARENT TESTA 12 protein, putative [Ricinus communis]
14 Hb_009785_010 0.1480388025 - - PREDICTED: uncharacterized protein LOC105648749 [Jatropha curcas]
15 Hb_003399_030 0.1488034321 - - PREDICTED: isoflavone 2'-hydroxylase-like [Jatropha curcas]
16 Hb_000616_050 0.1503300175 - - PREDICTED: uncharacterized protein LOC105639906 [Jatropha curcas]
17 Hb_002686_390 0.1506434858 - - PREDICTED: uncharacterized protein LOC105647789 [Jatropha curcas]
18 Hb_003807_020 0.151375514 - - PREDICTED: subtilisin-like protease SBT2.5 [Jatropha curcas]
19 Hb_002750_010 0.1522417835 transcription factor TF Family: WRKY WRKY transcription factor 15 family protein [Populus trichocarpa]
20 Hb_000034_030 0.1536155281 - - protein phosphatase 2c, putative [Ricinus communis]

Gene co-expression network

sample Hb_000029_370 Hb_000029_370 Hb_005237_040 Hb_005237_040 Hb_000029_370--Hb_005237_040 Hb_001678_030 Hb_001678_030 Hb_000029_370--Hb_001678_030 Hb_014037_010 Hb_014037_010 Hb_000029_370--Hb_014037_010 Hb_000236_050 Hb_000236_050 Hb_000029_370--Hb_000236_050 Hb_002150_010 Hb_002150_010 Hb_000029_370--Hb_002150_010 Hb_001221_480 Hb_001221_480 Hb_000029_370--Hb_001221_480 Hb_009785_010 Hb_009785_010 Hb_005237_040--Hb_009785_010 Hb_005237_040--Hb_014037_010 Hb_004884_200 Hb_004884_200 Hb_005237_040--Hb_004884_200 Hb_005237_040--Hb_000236_050 Hb_006711_020 Hb_006711_020 Hb_005237_040--Hb_006711_020 Hb_002391_350 Hb_002391_350 Hb_005237_040--Hb_002391_350 Hb_000616_050 Hb_000616_050 Hb_001678_030--Hb_000616_050 Hb_001408_050 Hb_001408_050 Hb_001678_030--Hb_001408_050 Hb_001329_040 Hb_001329_040 Hb_001678_030--Hb_001329_040 Hb_001838_050 Hb_001838_050 Hb_001678_030--Hb_001838_050 Hb_032050_050 Hb_032050_050 Hb_001678_030--Hb_032050_050 Hb_014037_010--Hb_009785_010 Hb_014037_010--Hb_004884_200 Hb_014037_010--Hb_000236_050 Hb_014037_010--Hb_002391_350 Hb_005211_090 Hb_005211_090 Hb_014037_010--Hb_005211_090 Hb_000236_050--Hb_009785_010 Hb_000236_050--Hb_004884_200 Hb_000236_050--Hb_005211_090 Hb_000236_050--Hb_002391_350 Hb_002150_010--Hb_002391_350 Hb_000237_150 Hb_000237_150 Hb_002150_010--Hb_000237_150 Hb_000852_050 Hb_000852_050 Hb_002150_010--Hb_000852_050 Hb_002150_010--Hb_032050_050 Hb_002150_010--Hb_001838_050 Hb_088916_010 Hb_088916_010 Hb_002150_010--Hb_088916_010 Hb_003807_020 Hb_003807_020 Hb_001221_480--Hb_003807_020 Hb_000649_030 Hb_000649_030 Hb_001221_480--Hb_000649_030 Hb_004447_020 Hb_004447_020 Hb_001221_480--Hb_004447_020 Hb_111582_010 Hb_111582_010 Hb_001221_480--Hb_111582_010 Hb_000335_050 Hb_000335_050 Hb_001221_480--Hb_000335_050 Hb_001454_410 Hb_001454_410 Hb_001221_480--Hb_001454_410
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.218734 0.0697837 0.144485 0 0.00466066
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0230864 0.00908405 0 0.575828 0.0389004

CAGE analysis