Hb_000029_380

Information

Type -
Description -
Location Contig29: 329147-331991
Sequence    

Annotation

kegg
ID rcu:RCOM_0938170
description hypothetical protein
nr
ID XP_002519098.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9XIA4
description Cytochrome c biogenesis protein CCS1, chloroplastic OS=Arabidopsis thaliana GN=CCS1 PE=1 SV=1
trembl
ID B9RZC9
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0938170 PE=3 SV=1
Gene Ontology
ID GO:0000023
description cytochrome c biogenesis protein chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30382: 327652-331961 , PASA_asmbl_30383: 329017-329250 , PASA_asmbl_30384: 332793-333343
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000029_380 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_012940_020 0.1261103981 - - zeaxanthin epoxidase, putative [Ricinus communis]
3 Hb_068804_110 0.1301156875 - - PREDICTED: serine hydroxymethyltransferase, mitochondrial [Jatropha curcas]
4 Hb_005228_060 0.1346938754 - - PREDICTED: uncharacterized protein LOC102604101 [Solanum tuberosum]
5 Hb_156850_020 0.135910024 - - ATP-dependent zinc metalloprotease FTSH 1, chloroplastic [Glycine soja]
6 Hb_185274_020 0.1359892178 - - Ycf2 (chloroplast) [Andrographis paniculata]
7 Hb_007595_050 0.1364135211 - - hypothetical chloroplast RF2 [Hevea brasiliensis]
8 Hb_007595_020 0.1371967113 - - maturase K [Hevea brasiliensis]
9 Hb_000367_220 0.141922103 - - hypothetical protein RCOM_1470580 [Ricinus communis]
10 Hb_003944_010 0.1424318093 - - PREDICTED: receptor-like protein kinase HSL1 [Jatropha curcas]
11 Hb_001295_080 0.1442705706 - - Protein KES1, putative [Ricinus communis]
12 Hb_000359_070 0.1462376242 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 2, chloroplastic [Jatropha curcas]
13 Hb_041813_060 0.148200765 - - ribosomal protein L10 (mitochondrion) [Ricinus communis]
14 Hb_011900_020 0.1490712777 - - PREDICTED: pentatricopeptide repeat-containing protein At4g16390, chloroplastic [Jatropha curcas]
15 Hb_001338_080 0.1495027198 - - NADH-plastoquinone oxidoreductase subunit 2 (chloroplast) [Tamarindus indica]
16 Hb_028960_010 0.1497188584 - - phosphoglycerate kinase, putative [Ricinus communis]
17 Hb_106552_030 0.1506575334 - - hypothetical protein POPTR_0006s23180g [Populus trichocarpa]
18 Hb_001146_030 0.1515742609 - - cytochrome P450, putative [Ricinus communis]
19 Hb_054865_040 0.1516222519 - - PREDICTED: auxin-induced protein 15A [Jatropha curcas]
20 Hb_006816_040 0.1522138398 - - PREDICTED: pentatricopeptide repeat-containing protein At5g48910-like [Jatropha curcas]

Gene co-expression network

sample Hb_000029_380 Hb_000029_380 Hb_012940_020 Hb_012940_020 Hb_000029_380--Hb_012940_020 Hb_068804_110 Hb_068804_110 Hb_000029_380--Hb_068804_110 Hb_005228_060 Hb_005228_060 Hb_000029_380--Hb_005228_060 Hb_156850_020 Hb_156850_020 Hb_000029_380--Hb_156850_020 Hb_185274_020 Hb_185274_020 Hb_000029_380--Hb_185274_020 Hb_007595_050 Hb_007595_050 Hb_000029_380--Hb_007595_050 Hb_028960_010 Hb_028960_010 Hb_012940_020--Hb_028960_010 Hb_012940_020--Hb_156850_020 Hb_012940_020--Hb_068804_110 Hb_003336_020 Hb_003336_020 Hb_012940_020--Hb_003336_020 Hb_106552_030 Hb_106552_030 Hb_012940_020--Hb_106552_030 Hb_000359_070 Hb_000359_070 Hb_012940_020--Hb_000359_070 Hb_007595_020 Hb_007595_020 Hb_068804_110--Hb_007595_020 Hb_068804_110--Hb_156850_020 Hb_001610_100 Hb_001610_100 Hb_068804_110--Hb_001610_100 Hb_001085_200 Hb_001085_200 Hb_068804_110--Hb_001085_200 Hb_068804_110--Hb_028960_010 Hb_005228_060--Hb_007595_020 Hb_005228_060--Hb_007595_050 Hb_000367_220 Hb_000367_220 Hb_005228_060--Hb_000367_220 Hb_005228_060--Hb_028960_010 Hb_005228_060--Hb_068804_110 Hb_000186_160 Hb_000186_160 Hb_005228_060--Hb_000186_160 Hb_156850_020--Hb_106552_030 Hb_010080_070 Hb_010080_070 Hb_156850_020--Hb_010080_070 Hb_156850_020--Hb_028960_010 Hb_011900_020 Hb_011900_020 Hb_156850_020--Hb_011900_020 Hb_156850_020--Hb_000359_070 Hb_001083_040 Hb_001083_040 Hb_185274_020--Hb_001083_040 Hb_003125_100 Hb_003125_100 Hb_185274_020--Hb_003125_100 Hb_000156_240 Hb_000156_240 Hb_185274_020--Hb_000156_240 Hb_003032_090 Hb_003032_090 Hb_185274_020--Hb_003032_090 Hb_185274_010 Hb_185274_010 Hb_185274_020--Hb_185274_010 Hb_003861_150 Hb_003861_150 Hb_007595_050--Hb_003861_150 Hb_002835_090 Hb_002835_090 Hb_007595_050--Hb_002835_090 Hb_007595_050--Hb_007595_020 Hb_007595_050--Hb_011900_020 Hb_007595_050--Hb_156850_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.747738 1.46163 4.45182 4.96569 0.177116 1.90856
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.055589 0.0656034 0.824725 1.49066 40.1907

CAGE analysis