Hb_000029_390

Information

Type transcription factor
Description TF Family: mTERF
Location Contig29: 332344-333189
Sequence    

Annotation

kegg
ID rcu:RCOM_0938160
description hypothetical protein
nr
ID XP_002519097.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RZC8
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0938160 PE=4 SV=1
Gene Ontology
ID GO:0005739
description mitochondrial transcription termination factor family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000029_390 0.0 transcription factor TF Family: mTERF conserved hypothetical protein [Ricinus communis]
2 Hb_004920_080 0.048299922 - - PREDICTED: calvin cycle protein CP12-2, chloroplastic-like [Jatropha curcas]
3 Hb_002995_060 0.0599403536 - - PREDICTED: alkane hydroxylase MAH1-like [Jatropha curcas]
4 Hb_000282_100 0.0650799442 - - PREDICTED: glycine dehydrogenase (decarboxylating), mitochondrial [Jatropha curcas]
5 Hb_009093_020 0.0693502333 - - PREDICTED: uncharacterized protein LOC105642100 [Jatropha curcas]
6 Hb_001517_060 0.0725670203 - - phosphoribulose kinase, putative [Ricinus communis]
7 Hb_004631_020 0.0747039538 - - PREDICTED: protein TRANSPARENT TESTA 12-like [Jatropha curcas]
8 Hb_004712_230 0.0809038037 - - PREDICTED: retrotransposon-like protein 1 [Jatropha curcas]
9 Hb_011381_120 0.0818045398 - - PREDICTED: protein ASPARTIC PROTEASE IN GUARD CELL 2-like [Jatropha curcas]
10 Hb_001135_170 0.0852908041 transcription factor TF Family: Orphans Two-component response regulator ARR2, putative [Ricinus communis]
11 Hb_001289_050 0.0854211414 - - hypothetical protein Poptr_cp075 [Populus trichocarpa]
12 Hb_000992_090 0.0859590125 transcription factor TF Family: Orphans CIL, putative [Ricinus communis]
13 Hb_000841_040 0.0878724189 transcription factor TF Family: C2C2-CO-like transcription factor, putative [Ricinus communis]
14 Hb_001135_190 0.0913768546 transcription factor TF Family: Orphans Pseudo response regulator isoform 11 [Theobroma cacao]
15 Hb_002289_070 0.0919155644 - - PREDICTED: magnesium-chelatase subunit ChlH, chloroplastic [Jatropha curcas]
16 Hb_005736_030 0.0925434107 - - thioredoxin m(mitochondrial)-type, putative [Ricinus communis]
17 Hb_001951_040 0.093122684 - - PREDICTED: probable starch synthase 4, chloroplastic/amyloplastic isoform X1 [Jatropha curcas]
18 Hb_023344_040 0.0931976216 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001671_130 0.0938125387 - - PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4-like [Jatropha curcas]
20 Hb_000009_470 0.0943459732 - - Oxygen-evolving enhancer protein 1, chloroplast precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_000029_390 Hb_000029_390 Hb_004920_080 Hb_004920_080 Hb_000029_390--Hb_004920_080 Hb_002995_060 Hb_002995_060 Hb_000029_390--Hb_002995_060 Hb_000282_100 Hb_000282_100 Hb_000029_390--Hb_000282_100 Hb_009093_020 Hb_009093_020 Hb_000029_390--Hb_009093_020 Hb_001517_060 Hb_001517_060 Hb_000029_390--Hb_001517_060 Hb_004631_020 Hb_004631_020 Hb_000029_390--Hb_004631_020 Hb_004920_080--Hb_002995_060 Hb_000629_110 Hb_000629_110 Hb_004920_080--Hb_000629_110 Hb_010021_040 Hb_010021_040 Hb_004920_080--Hb_010021_040 Hb_004712_230 Hb_004712_230 Hb_004920_080--Hb_004712_230 Hb_005736_030 Hb_005736_030 Hb_004920_080--Hb_005736_030 Hb_002995_060--Hb_000629_110 Hb_011381_120 Hb_011381_120 Hb_002995_060--Hb_011381_120 Hb_002995_060--Hb_004712_230 Hb_001671_130 Hb_001671_130 Hb_002995_060--Hb_001671_130 Hb_001289_050 Hb_001289_050 Hb_000282_100--Hb_001289_050 Hb_000282_100--Hb_009093_020 Hb_000841_040 Hb_000841_040 Hb_000282_100--Hb_000841_040 Hb_000282_100--Hb_004631_020 Hb_001832_180 Hb_001832_180 Hb_000282_100--Hb_001832_180 Hb_009093_020--Hb_000841_040 Hb_009093_020--Hb_011381_120 Hb_009093_020--Hb_001517_060 Hb_009093_020--Hb_001289_050 Hb_003090_050 Hb_003090_050 Hb_009093_020--Hb_003090_050 Hb_002289_070 Hb_002289_070 Hb_001517_060--Hb_002289_070 Hb_002534_090 Hb_002534_090 Hb_001517_060--Hb_002534_090 Hb_001579_050 Hb_001579_050 Hb_001517_060--Hb_001579_050 Hb_000009_470 Hb_000009_470 Hb_001517_060--Hb_000009_470 Hb_004631_020--Hb_004712_230 Hb_004631_020--Hb_000841_040 Hb_004631_020--Hb_003090_050 Hb_001135_170 Hb_001135_170 Hb_004631_020--Hb_001135_170 Hb_004631_020--Hb_005736_030 Hb_032631_060 Hb_032631_060 Hb_004631_020--Hb_032631_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0615264 2.33853 12.3127 5.42759 0 0.0482057
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0627024 0.0986127 0 0.298807 65.7745

CAGE analysis