Hb_000029_400

Information

Type -
Description -
Location Contig29: 349310-352025
Sequence    

Annotation

kegg
ID pop:POPTR_0009s11540g
description POPTRDRAFT_821204; hypothetical protein
nr
ID XP_012069535.1
description PREDICTED: probable 1-acyl-sn-glycerol-3-phosphate acyltransferase 5 isoform X1 [Jatropha curcas]
swissprot
ID Q9LHN4
description Probable 1-acyl-sn-glycerol-3-phosphate acyltransferase 5 OS=Arabidopsis thaliana GN=LPAT5 PE=2 SV=1
trembl
ID B2LWM5
description 1-acyl-sn-glycerol-3-phosphate acyltransferase OS=Ricinus communis GN=LPAAT5 PE=2 SV=1
Gene Ontology
ID GO:0016746
description probable 1-acyl-sn-glycerol-3-phosphate acyltransferase 5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30385: 348441-351963
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000029_400 0.0 - - PREDICTED: probable 1-acyl-sn-glycerol-3-phosphate acyltransferase 5 isoform X1 [Jatropha curcas]
2 Hb_001504_010 0.0693400043 - - PREDICTED: uncharacterized protein LOC105645377 [Jatropha curcas]
3 Hb_007483_070 0.0769962507 - - PREDICTED: intersectin-1 isoform X1 [Populus euphratica]
4 Hb_001882_010 0.0782478948 - - -
5 Hb_001053_190 0.0824728465 - - ADP,ATP carrier protein, putative [Ricinus communis]
6 Hb_000163_260 0.0830514678 - - PREDICTED: uncharacterized protein LOC105642518 [Jatropha curcas]
7 Hb_000926_060 0.0841076563 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000318_220 0.0848323982 - - conserved hypothetical protein [Ricinus communis]
9 Hb_005665_090 0.0870739241 - - PREDICTED: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase isoform X2 [Jatropha curcas]
10 Hb_068079_010 0.0889134694 - - -
11 Hb_001623_490 0.0896971318 - - PREDICTED: haloacid dehalogenase-like hydrolase domain-containing protein At2g33255 isoform X2 [Jatropha curcas]
12 Hb_000579_080 0.0905479034 - - PREDICTED: 26S protease regulatory subunit S10B homolog B [Jatropha curcas]
13 Hb_001832_200 0.091668041 - - PREDICTED: PCI domain-containing protein 2 isoform X1 [Jatropha curcas]
14 Hb_003680_220 0.0921573814 - - hypothetical protein B456_002G243700 [Gossypium raimondii]
15 Hb_009476_130 0.0922636966 - - hypothetical protein VITISV_005430 [Vitis vinifera]
16 Hb_070624_010 0.0938050229 - - PREDICTED: reticulocalbin-2 [Jatropha curcas]
17 Hb_021596_020 0.0949783007 - - hypothetical protein JCGZ_02034 [Jatropha curcas]
18 Hb_000007_090 0.0969680279 - - PREDICTED: LAG1 longevity assurance homolog 3 [Jatropha curcas]
19 Hb_000645_180 0.0972676895 rubber biosynthesis Gene Name: Dihydrolipoamide dehydrogenase Lipoamide dehydrogenase 1 isoform 1 [Theobroma cacao]
20 Hb_001009_140 0.0974856415 - - hypothetical protein JCGZ_11337 [Jatropha curcas]

Gene co-expression network

sample Hb_000029_400 Hb_000029_400 Hb_001504_010 Hb_001504_010 Hb_000029_400--Hb_001504_010 Hb_007483_070 Hb_007483_070 Hb_000029_400--Hb_007483_070 Hb_001882_010 Hb_001882_010 Hb_000029_400--Hb_001882_010 Hb_001053_190 Hb_001053_190 Hb_000029_400--Hb_001053_190 Hb_000163_260 Hb_000163_260 Hb_000029_400--Hb_000163_260 Hb_000926_060 Hb_000926_060 Hb_000029_400--Hb_000926_060 Hb_001504_010--Hb_007483_070 Hb_021596_020 Hb_021596_020 Hb_001504_010--Hb_021596_020 Hb_001504_010--Hb_000163_260 Hb_000579_080 Hb_000579_080 Hb_001504_010--Hb_000579_080 Hb_008304_020 Hb_008304_020 Hb_001504_010--Hb_008304_020 Hb_000815_300 Hb_000815_300 Hb_001504_010--Hb_000815_300 Hb_001279_190 Hb_001279_190 Hb_007483_070--Hb_001279_190 Hb_007483_070--Hb_008304_020 Hb_007483_070--Hb_000815_300 Hb_000120_890 Hb_000120_890 Hb_007483_070--Hb_000120_890 Hb_011716_010 Hb_011716_010 Hb_007483_070--Hb_011716_010 Hb_001882_010--Hb_000163_260 Hb_000291_180 Hb_000291_180 Hb_001882_010--Hb_000291_180 Hb_000007_090 Hb_000007_090 Hb_001882_010--Hb_000007_090 Hb_160271_010 Hb_160271_010 Hb_001882_010--Hb_160271_010 Hb_073973_090 Hb_073973_090 Hb_001882_010--Hb_073973_090 Hb_002686_080 Hb_002686_080 Hb_001053_190--Hb_002686_080 Hb_003540_050 Hb_003540_050 Hb_001053_190--Hb_003540_050 Hb_000724_020 Hb_000724_020 Hb_001053_190--Hb_000724_020 Hb_000318_220 Hb_000318_220 Hb_001053_190--Hb_000318_220 Hb_016448_010 Hb_016448_010 Hb_001053_190--Hb_016448_010 Hb_012438_030 Hb_012438_030 Hb_000163_260--Hb_012438_030 Hb_009476_130 Hb_009476_130 Hb_000163_260--Hb_009476_130 Hb_001703_040 Hb_001703_040 Hb_000163_260--Hb_001703_040 Hb_000163_260--Hb_000120_890 Hb_000926_060--Hb_000579_080 Hb_070624_010 Hb_070624_010 Hb_000926_060--Hb_070624_010 Hb_003680_220 Hb_003680_220 Hb_000926_060--Hb_003680_220 Hb_000500_220 Hb_000500_220 Hb_000926_060--Hb_000500_220 Hb_008725_270 Hb_008725_270 Hb_000926_060--Hb_008725_270 Hb_000358_210 Hb_000358_210 Hb_000926_060--Hb_000358_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.43008 2.95745 9.9968 6.38897 2.47683 1.66527
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.01 2.68415 1.39766 4.19428 6.60158

CAGE analysis