Hb_000029_420

Information

Type -
Description -
Location Contig29: 358565-358891
Sequence    

Annotation

kegg
ID rcu:RCOM_0938020
description lipid binding protein, putative
nr
ID XP_012069575.1
description PREDICTED: putative lipid-transfer protein DIR1 [Jatropha curcas]
swissprot
ID Q8W453
description Putative lipid-transfer protein DIR1 OS=Arabidopsis thaliana GN=DIR1 PE=1 SV=1
trembl
ID A0A067LN44
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10060 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30386: 358510-359111
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000029_420 0.0 - - PREDICTED: putative lipid-transfer protein DIR1 [Jatropha curcas]
2 Hb_000194_080 0.084196439 - - hypothetical protein JCGZ_18743 [Jatropha curcas]
3 Hb_111985_160 0.0869429071 - - hypothetical protein B456_010G008900 [Gossypium raimondii]
4 Hb_003064_010 0.0930414359 - - Senescence-related gene 1 [Theobroma cacao]
5 Hb_004055_080 0.0947660828 - - calmodulin binding protein, putative [Ricinus communis]
6 Hb_111693_010 0.108544792 - - hypothetical protein JCGZ_21650 [Jatropha curcas]
7 Hb_001377_480 0.1214723173 transcription factor TF Family: MYB Myb domain protein 7, putative [Theobroma cacao]
8 Hb_000815_280 0.1259846077 - - PREDICTED: phosphate transporter PHO1 homolog 3 [Jatropha curcas]
9 Hb_001473_100 0.1263879981 - - chalcone synthase 1 [Jatropha curcas]
10 Hb_116469_010 0.1298326318 - - PREDICTED: uncharacterized protein LOC105647834 [Jatropha curcas]
11 Hb_000589_100 0.1309287455 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
12 Hb_111985_120 0.1311802932 - - dihydroflavonol-4-reductase [Vitis rotundifolia]
13 Hb_001623_400 0.1331220518 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000220_170 0.1343001124 - - -
15 Hb_028927_010 0.1353490363 - - leucine-rich repeat protein, putative [Ricinus communis]
16 Hb_058526_010 0.141755386 - - -
17 Hb_142522_030 0.1425053224 - - hypothetical protein JCGZ_21596 [Jatropha curcas]
18 Hb_000288_140 0.1433859971 - - PREDICTED: putative cysteine-rich receptor-like protein kinase 35 [Jatropha curcas]
19 Hb_011861_020 0.1460355543 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_06096 [Jatropha curcas]
20 Hb_000625_130 0.1478941926 - - PREDICTED: naringenin,2-oxoglutarate 3-dioxygenase [Jatropha curcas]

Gene co-expression network

sample Hb_000029_420 Hb_000029_420 Hb_000194_080 Hb_000194_080 Hb_000029_420--Hb_000194_080 Hb_111985_160 Hb_111985_160 Hb_000029_420--Hb_111985_160 Hb_003064_010 Hb_003064_010 Hb_000029_420--Hb_003064_010 Hb_004055_080 Hb_004055_080 Hb_000029_420--Hb_004055_080 Hb_111693_010 Hb_111693_010 Hb_000029_420--Hb_111693_010 Hb_001377_480 Hb_001377_480 Hb_000029_420--Hb_001377_480 Hb_000194_080--Hb_003064_010 Hb_001473_100 Hb_001473_100 Hb_000194_080--Hb_001473_100 Hb_002809_020 Hb_002809_020 Hb_000194_080--Hb_002809_020 Hb_000815_280 Hb_000815_280 Hb_000194_080--Hb_000815_280 Hb_000086_730 Hb_000086_730 Hb_000194_080--Hb_000086_730 Hb_111985_160--Hb_111693_010 Hb_111985_160--Hb_004055_080 Hb_111985_120 Hb_111985_120 Hb_111985_160--Hb_111985_120 Hb_000220_170 Hb_000220_170 Hb_111985_160--Hb_000220_170 Hb_111985_160--Hb_000815_280 Hb_004021_100 Hb_004021_100 Hb_003064_010--Hb_004021_100 Hb_001623_400 Hb_001623_400 Hb_003064_010--Hb_001623_400 Hb_003064_010--Hb_004055_080 Hb_049677_010 Hb_049677_010 Hb_003064_010--Hb_049677_010 Hb_004055_080--Hb_111693_010 Hb_004055_080--Hb_000220_170 Hb_058526_010 Hb_058526_010 Hb_004055_080--Hb_058526_010 Hb_004055_080--Hb_001473_100 Hb_005653_100 Hb_005653_100 Hb_004055_080--Hb_005653_100 Hb_111693_010--Hb_000220_170 Hb_111693_010--Hb_058526_010 Hb_111693_010--Hb_005653_100 Hb_001789_010 Hb_001789_010 Hb_111693_010--Hb_001789_010 Hb_187211_010 Hb_187211_010 Hb_001377_480--Hb_187211_010 Hb_001377_480--Hb_111985_120 Hb_000625_130 Hb_000625_130 Hb_001377_480--Hb_000625_130 Hb_001377_480--Hb_001789_010 Hb_001101_020 Hb_001101_020 Hb_001377_480--Hb_001101_020 Hb_142522_030 Hb_142522_030 Hb_001377_480--Hb_142522_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.127474 10.015 23.0401 16.9828 0.1299 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 72.8169 0.773693

CAGE analysis