Hb_000029_440

Information

Type -
Description -
Location Contig29: 372690-378555
Sequence    

Annotation

kegg
ID vvi:100250299
description dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa subunit
nr
ID XP_002284627.1
description PREDICTED: dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa subunit isoform X2 [Vitis vinifera]
swissprot
ID Q6ZLK0
description Dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa subunit OS=Oryza sativa subsp. japonica GN=OST48 PE=2 SV=1
trembl
ID D7TPX8
description Dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa subunit OS=Vitis vinifera GN=VIT_03s0063g02100 PE=3 SV=1
Gene Ontology
ID GO:0004579
description dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kda subunit-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30388: 372991-378385
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000029_440 0.0 - - PREDICTED: dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa subunit isoform X2 [Vitis vinifera]
2 Hb_030565_110 0.1138462453 - - PREDICTED: adenosylhomocysteinase 1 [Jatropha curcas]
3 Hb_002072_010 0.1241362977 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000254_070 0.1245006758 - - PREDICTED: protein disulfide isomerase-like 1-6 [Jatropha curcas]
5 Hb_000003_310 0.132812109 - - PREDICTED: glycosyltransferase-like KOBITO 1 [Jatropha curcas]
6 Hb_004330_080 0.1335937224 - - PREDICTED: protein STRUBBELIG-RECEPTOR FAMILY 8 isoform X1 [Jatropha curcas]
7 Hb_069619_010 0.1356142086 - - Aspartic proteinase precursor, putative [Ricinus communis]
8 Hb_001021_010 0.1457992768 - - PREDICTED: bifunctional protein FolD 2 [Jatropha curcas]
9 Hb_003371_190 0.1461526523 - - PREDICTED: beta-glucosidase 13-like [Jatropha curcas]
10 Hb_003058_200 0.1480696443 - - PREDICTED: dihydropyrimidinase [Populus euphratica]
11 Hb_031931_020 0.1504850775 - - Minor histocompatibility antigen H13, putative [Ricinus communis]
12 Hb_000244_260 0.151870776 - - PREDICTED: probable pectinesterase/pectinesterase inhibitor 51 isoform X2 [Jatropha curcas]
13 Hb_002367_110 0.1530238295 - - PREDICTED: cinnamyl alcohol dehydrogenase 1 [Sesamum indicum]
14 Hb_002477_040 0.1545542205 - - P-loop containing nucleoside triphosphate hydrolases superfamily protein isoform 2 [Theobroma cacao]
15 Hb_000098_200 0.1554055993 - - PREDICTED: serine hydroxymethyltransferase 7-like isoform X2 [Populus euphratica]
16 Hb_001006_270 0.1556539485 - - peptide transporter, putative [Ricinus communis]
17 Hb_000679_040 0.1577036563 - - Cellulose synthase 1 [Theobroma cacao]
18 Hb_000019_170 0.1596729272 - - PREDICTED: alpha-mannosidase [Jatropha curcas]
19 Hb_001159_030 0.1617343163 - - PREDICTED: probable protein S-acyltransferase 14 [Jatropha curcas]
20 Hb_004094_020 0.1630176594 - - Pyruvate kinase family protein isoform 1 [Theobroma cacao]

Gene co-expression network

sample Hb_000029_440 Hb_000029_440 Hb_030565_110 Hb_030565_110 Hb_000029_440--Hb_030565_110 Hb_002072_010 Hb_002072_010 Hb_000029_440--Hb_002072_010 Hb_000254_070 Hb_000254_070 Hb_000029_440--Hb_000254_070 Hb_000003_310 Hb_000003_310 Hb_000029_440--Hb_000003_310 Hb_004330_080 Hb_004330_080 Hb_000029_440--Hb_004330_080 Hb_069619_010 Hb_069619_010 Hb_000029_440--Hb_069619_010 Hb_030565_110--Hb_002072_010 Hb_003371_190 Hb_003371_190 Hb_030565_110--Hb_003371_190 Hb_030565_110--Hb_000003_310 Hb_000244_260 Hb_000244_260 Hb_030565_110--Hb_000244_260 Hb_030565_110--Hb_000254_070 Hb_002367_110 Hb_002367_110 Hb_030565_110--Hb_002367_110 Hb_003058_200 Hb_003058_200 Hb_002072_010--Hb_003058_200 Hb_000674_010 Hb_000674_010 Hb_002072_010--Hb_000674_010 Hb_002072_010--Hb_000244_260 Hb_005000_090 Hb_005000_090 Hb_002072_010--Hb_005000_090 Hb_000019_170 Hb_000019_170 Hb_002072_010--Hb_000019_170 Hb_000254_070--Hb_000003_310 Hb_000701_030 Hb_000701_030 Hb_000254_070--Hb_000701_030 Hb_000679_040 Hb_000679_040 Hb_000254_070--Hb_000679_040 Hb_007317_020 Hb_007317_020 Hb_000254_070--Hb_007317_020 Hb_000418_020 Hb_000418_020 Hb_000254_070--Hb_000418_020 Hb_000494_030 Hb_000494_030 Hb_000254_070--Hb_000494_030 Hb_000003_310--Hb_000701_030 Hb_021576_070 Hb_021576_070 Hb_000003_310--Hb_021576_070 Hb_000684_310 Hb_000684_310 Hb_000003_310--Hb_000684_310 Hb_000003_310--Hb_000679_040 Hb_000003_310--Hb_000418_020 Hb_029510_100 Hb_029510_100 Hb_004330_080--Hb_029510_100 Hb_001014_190 Hb_001014_190 Hb_004330_080--Hb_001014_190 Hb_135757_020 Hb_135757_020 Hb_004330_080--Hb_135757_020 Hb_004094_020 Hb_004094_020 Hb_004330_080--Hb_004094_020 Hb_004330_080--Hb_030565_110 Hb_000723_010 Hb_000723_010 Hb_069619_010--Hb_000723_010 Hb_002851_010 Hb_002851_010 Hb_069619_010--Hb_002851_010 Hb_069619_010--Hb_003058_200 Hb_000152_700 Hb_000152_700 Hb_069619_010--Hb_000152_700 Hb_069619_010--Hb_000674_010 Hb_069619_010--Hb_004094_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.65498 4.7245 7.13412 24.6348 6.98321 5.87269
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.24165 1.18861 2.28592 18.8443 8.6925

CAGE analysis