Hb_000030_130

Information

Type transcription factor
Description TF Family: G2-like
Location Contig30: 87023-89796
Sequence    

Annotation

kegg
ID rcu:RCOM_1121810
description transcription factor, putative
nr
ID XP_002525443.1
description transcription factor, putative [Ricinus communis]
swissprot
ID Q9SAK5
description Myb family transcription factor APL OS=Arabidopsis thaliana GN=APL PE=2 SV=2
trembl
ID B9SHH4
description Transcription factor, putative OS=Ricinus communis GN=RCOM_1121810 PE=4 SV=1
Gene Ontology
ID GO:0003677
description myb family transcription factor family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31494: 87509-89179
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000030_130 0.0 transcription factor TF Family: G2-like transcription factor, putative [Ricinus communis]
2 Hb_019516_060 0.1002615807 - - PREDICTED: uncharacterized protein LOC105634259 [Jatropha curcas]
3 Hb_174541_030 0.113227346 - - Cytochrome P450, family 98, subfamily A, polypeptide 3 [Theobroma cacao]
4 Hb_003086_030 0.1168457038 - - PREDICTED: fasciclin-like arabinogalactan protein 17 [Jatropha curcas]
5 Hb_000246_130 0.1216422432 - - tubulin alpha chain, putative [Ricinus communis]
6 Hb_000928_200 0.1247443085 - - PREDICTED: RING-H2 finger protein ATL52-like [Jatropha curcas]
7 Hb_030565_100 0.1252133257 - - serine hydroxymethyltransferase, putative [Ricinus communis]
8 Hb_002759_030 0.125414558 - - PREDICTED: serine/threonine-protein kinase PBS1 [Jatropha curcas]
9 Hb_000069_560 0.1258543084 - - hypothetical protein POPTR_0002s16980g [Populus trichocarpa]
10 Hb_000176_080 0.1269673157 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g30520 [Jatropha curcas]
11 Hb_084147_010 0.1360257626 - - amino acid transporter, putative [Ricinus communis]
12 Hb_005539_140 0.1373560309 - - PREDICTED: U-box domain-containing protein 19-like [Jatropha curcas]
13 Hb_001001_070 0.1381015658 - - PREDICTED: uncharacterized protein LOC105633663 [Jatropha curcas]
14 Hb_000251_120 0.1393058558 - - O-acetyltransferase, putative [Ricinus communis]
15 Hb_000457_120 0.1397600455 - - PREDICTED: death-associated protein kinase dapk-1 [Jatropha curcas]
16 Hb_000108_180 0.1410683336 - - PREDICTED: uncharacterized protein LOC105630021 [Jatropha curcas]
17 Hb_005183_130 0.1423799888 - - glycogenin, putative [Ricinus communis]
18 Hb_003554_040 0.1432045194 - - -
19 Hb_000054_010 0.143713813 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
20 Hb_001775_080 0.1451103363 - - fructose-bisphosphate aldolase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000030_130 Hb_000030_130 Hb_019516_060 Hb_019516_060 Hb_000030_130--Hb_019516_060 Hb_174541_030 Hb_174541_030 Hb_000030_130--Hb_174541_030 Hb_003086_030 Hb_003086_030 Hb_000030_130--Hb_003086_030 Hb_000246_130 Hb_000246_130 Hb_000030_130--Hb_000246_130 Hb_000928_200 Hb_000928_200 Hb_000030_130--Hb_000928_200 Hb_030565_100 Hb_030565_100 Hb_000030_130--Hb_030565_100 Hb_019516_060--Hb_000246_130 Hb_000820_110 Hb_000820_110 Hb_019516_060--Hb_000820_110 Hb_003462_040 Hb_003462_040 Hb_019516_060--Hb_003462_040 Hb_012395_110 Hb_012395_110 Hb_019516_060--Hb_012395_110 Hb_006750_010 Hb_006750_010 Hb_019516_060--Hb_006750_010 Hb_004117_020 Hb_004117_020 Hb_174541_030--Hb_004117_020 Hb_174541_030--Hb_030565_100 Hb_000457_120 Hb_000457_120 Hb_174541_030--Hb_000457_120 Hb_002203_020 Hb_002203_020 Hb_174541_030--Hb_002203_020 Hb_000392_540 Hb_000392_540 Hb_174541_030--Hb_000392_540 Hb_000003_580 Hb_000003_580 Hb_003086_030--Hb_000003_580 Hb_003125_210 Hb_003125_210 Hb_003086_030--Hb_003125_210 Hb_002894_080 Hb_002894_080 Hb_003086_030--Hb_002894_080 Hb_003086_030--Hb_019516_060 Hb_003086_030--Hb_000457_120 Hb_001102_160 Hb_001102_160 Hb_000246_130--Hb_001102_160 Hb_000246_130--Hb_030565_100 Hb_002316_080 Hb_002316_080 Hb_000246_130--Hb_002316_080 Hb_084147_010 Hb_084147_010 Hb_000246_130--Hb_084147_010 Hb_000928_200--Hb_000457_120 Hb_000317_170 Hb_000317_170 Hb_000928_200--Hb_000317_170 Hb_005305_040 Hb_005305_040 Hb_000928_200--Hb_005305_040 Hb_000856_030 Hb_000856_030 Hb_000928_200--Hb_000856_030 Hb_000030_230 Hb_000030_230 Hb_000928_200--Hb_000030_230 Hb_000307_060 Hb_000307_060 Hb_000928_200--Hb_000307_060 Hb_000077_100 Hb_000077_100 Hb_030565_100--Hb_000077_100 Hb_029223_040 Hb_029223_040 Hb_030565_100--Hb_029223_040 Hb_000236_180 Hb_000236_180 Hb_030565_100--Hb_000236_180 Hb_003470_110 Hb_003470_110 Hb_030565_100--Hb_003470_110 Hb_000297_140 Hb_000297_140 Hb_030565_100--Hb_000297_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.271261 1.07158 1.16877 7.72884 0.180608 0.0952889
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.228055 0.281935 0.0961705 0.388966 2.89095

CAGE analysis