Hb_000030_150

Information

Type -
Description -
Location Contig30: 119063-122514
Sequence    

Annotation

kegg
ID rcu:RCOM_1121830
description Glucan endo-1,3-beta-glucosidase precursor, putative (EC:3.2.1.39)
nr
ID XP_002525445.1
description Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
swissprot
ID Q6NKW9
description Glucan endo-1,3-beta-glucosidase 8 OS=Arabidopsis thaliana GN=At1g64760 PE=1 SV=2
trembl
ID B9SHH6
description Glucan endo-1,3-beta-glucosidase, putative OS=Ricinus communis GN=RCOM_1121830 PE=3 SV=1
Gene Ontology
ID GO:0042973
description glucan endo- -beta-glucosidase 8-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31500: 118303-119124 , PASA_asmbl_31501: 119281-122572 , PASA_asmbl_31502: 120786-120986
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000030_150 0.0 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
2 Hb_061802_020 0.0514727412 - - zinc finger family protein [Populus trichocarpa]
3 Hb_006949_040 0.0820298064 - - protein phosphatase 2c, putative [Ricinus communis]
4 Hb_002909_070 0.083608309 - - hypothetical protein POPTR_0006s03000g [Populus trichocarpa]
5 Hb_003787_020 0.0901596271 - - PREDICTED: replication protein A 70 kDa DNA-binding subunit A [Jatropha curcas]
6 Hb_000920_240 0.1032289958 - - PREDICTED: uncharacterized protein At5g39865 [Jatropha curcas]
7 Hb_002890_280 0.1045514779 - - hypothetical protein PRUPE_ppa009665mg [Prunus persica]
8 Hb_000297_200 0.10462364 - - PREDICTED: pentatricopeptide repeat-containing protein At2g33760-like [Vitis vinifera]
9 Hb_000193_290 0.1057007363 - - hypothetical protein JCGZ_11661 [Jatropha curcas]
10 Hb_006949_050 0.1063680746 - - unknown [Lotus japonicus]
11 Hb_002411_200 0.1064859948 - - conserved hypothetical protein [Ricinus communis]
12 Hb_005686_060 0.1073688895 - - PREDICTED: uncharacterized protein LOC101508199 [Cicer arietinum]
13 Hb_001195_690 0.1075678371 - - PREDICTED: E3 ubiquitin-protein ligase RNF185 [Jatropha curcas]
14 Hb_000905_200 0.1077897922 - - PREDICTED: zinc finger A20 and AN1 domain-containing stress-associated protein 5 [Jatropha curcas]
15 Hb_005431_010 0.1079354554 - - PREDICTED: glycine cleavage system H protein 2, mitochondrial [Jatropha curcas]
16 Hb_000049_120 0.1083763206 - - PREDICTED: xyloglucan galactosyltransferase KATAMARI1 [Jatropha curcas]
17 Hb_000840_210 0.1113134612 - - actin actin-like protein [Coniophora puteana RWD-64-598 SS2]
18 Hb_002301_140 0.1113648542 - - PREDICTED: uncharacterized protein At4g28440 [Jatropha curcas]
19 Hb_020178_070 0.1113766393 - - Protein Z, putative [Ricinus communis]
20 Hb_001671_020 0.1120372836 - - PREDICTED: pentatricopeptide repeat-containing protein At5g08510 [Jatropha curcas]

Gene co-expression network

sample Hb_000030_150 Hb_000030_150 Hb_061802_020 Hb_061802_020 Hb_000030_150--Hb_061802_020 Hb_006949_040 Hb_006949_040 Hb_000030_150--Hb_006949_040 Hb_002909_070 Hb_002909_070 Hb_000030_150--Hb_002909_070 Hb_003787_020 Hb_003787_020 Hb_000030_150--Hb_003787_020 Hb_000920_240 Hb_000920_240 Hb_000030_150--Hb_000920_240 Hb_002890_280 Hb_002890_280 Hb_000030_150--Hb_002890_280 Hb_061802_020--Hb_006949_040 Hb_000049_120 Hb_000049_120 Hb_061802_020--Hb_000049_120 Hb_001195_690 Hb_001195_690 Hb_061802_020--Hb_001195_690 Hb_001671_020 Hb_001671_020 Hb_061802_020--Hb_001671_020 Hb_020178_070 Hb_020178_070 Hb_061802_020--Hb_020178_070 Hb_006949_050 Hb_006949_050 Hb_006949_040--Hb_006949_050 Hb_000193_290 Hb_000193_290 Hb_006949_040--Hb_000193_290 Hb_000554_020 Hb_000554_020 Hb_006949_040--Hb_000554_020 Hb_006949_040--Hb_001671_020 Hb_003893_090 Hb_003893_090 Hb_002909_070--Hb_003893_090 Hb_000905_200 Hb_000905_200 Hb_002909_070--Hb_000905_200 Hb_003106_050 Hb_003106_050 Hb_002909_070--Hb_003106_050 Hb_002182_060 Hb_002182_060 Hb_002909_070--Hb_002182_060 Hb_002301_140 Hb_002301_140 Hb_002909_070--Hb_002301_140 Hb_006647_020 Hb_006647_020 Hb_003787_020--Hb_006647_020 Hb_002006_090 Hb_002006_090 Hb_003787_020--Hb_002006_090 Hb_003787_020--Hb_061802_020 Hb_007924_020 Hb_007924_020 Hb_003787_020--Hb_007924_020 Hb_000614_230 Hb_000614_230 Hb_003787_020--Hb_000614_230 Hb_000920_240--Hb_003787_020 Hb_000997_400 Hb_000997_400 Hb_000920_240--Hb_000997_400 Hb_029866_040 Hb_029866_040 Hb_000920_240--Hb_029866_040 Hb_000297_200 Hb_000297_200 Hb_000920_240--Hb_000297_200 Hb_000001_050 Hb_000001_050 Hb_000920_240--Hb_000001_050 Hb_000975_290 Hb_000975_290 Hb_002890_280--Hb_000975_290 Hb_007672_010 Hb_007672_010 Hb_002890_280--Hb_007672_010 Hb_001157_030 Hb_001157_030 Hb_002890_280--Hb_001157_030 Hb_005062_070 Hb_005062_070 Hb_002890_280--Hb_005062_070 Hb_009382_020 Hb_009382_020 Hb_002890_280--Hb_009382_020 Hb_000754_060 Hb_000754_060 Hb_002890_280--Hb_000754_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
31.547 18.5474 6.64813 15.1056 14.7131 31.1476
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
37.2441 35.7827 44.8969 7.66892 4.09292

CAGE analysis