Hb_000030_160

Information

Type transcription factor
Description TF Family: C2C2-GATA
Location Contig30: 127387-129100
Sequence    

Annotation

kegg
ID pop:POPTR_0019s04860g
description POPTRDRAFT_573903; hypothetical protein
nr
ID XP_012070476.1
description PREDICTED: GATA transcription factor 7-like [Jatropha curcas]
swissprot
ID O82632
description GATA transcription factor 9 OS=Arabidopsis thaliana GN=GATA9 PE=2 SV=1
trembl
ID A0A067KXQ6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02738 PE=4 SV=1
Gene Ontology
ID GO:0003700
description gata transcription factor 5-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31504: 127231-129080 , PASA_asmbl_31505: 128261-130246
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000030_160 0.0 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 7-like [Jatropha curcas]
2 Hb_004032_160 0.134415218 - - PREDICTED: UDP-galactose transporter 2-like [Jatropha curcas]
3 Hb_005784_070 0.1393685785 - - PREDICTED: protein TONSOKU isoform X2 [Jatropha curcas]
4 Hb_000883_170 0.1650769984 - - senescence-associated family protein [Populus trichocarpa]
5 Hb_000009_220 0.1657762743 - - PREDICTED: calcium uniporter protein 2, mitochondrial-like [Jatropha curcas]
6 Hb_004003_030 0.1683003926 - - conserved hypothetical protein [Ricinus communis]
7 Hb_007793_050 0.1704166968 - - conserved hypothetical protein [Ricinus communis]
8 Hb_011915_040 0.1767901208 - - hypothetical protein POPTR_0009s15120g [Populus trichocarpa]
9 Hb_069591_010 0.1867760649 - - -
10 Hb_014231_020 0.1897744394 - - PREDICTED: ras-related protein Rab11D [Jatropha curcas]
11 Hb_004361_060 0.1933497441 - - PREDICTED: uncharacterized protein LOC105636705 [Jatropha curcas]
12 Hb_000787_080 0.1950178184 - - PREDICTED: TBC1 domain family member 16-like [Jatropha curcas]
13 Hb_001195_640 0.1955898307 - - PREDICTED: uncharacterized protein LOC105633747 [Jatropha curcas]
14 Hb_000260_490 0.1958658964 - - PREDICTED: probable galacturonosyltransferase 7 isoform X3 [Jatropha curcas]
15 Hb_004712_190 0.1963313231 - - PREDICTED: uncharacterized protein LOC105633105 [Jatropha curcas]
16 Hb_001863_160 0.1971176587 - - PREDICTED: 14-3-3-like protein [Jatropha curcas]
17 Hb_001053_190 0.1976551721 - - ADP,ATP carrier protein, putative [Ricinus communis]
18 Hb_012286_020 0.1979455476 - - PREDICTED: uncharacterized protein LOC105648960 [Jatropha curcas]
19 Hb_011671_310 0.1983790727 - - PREDICTED: polycomb group protein EMBRYONIC FLOWER 2 [Jatropha curcas]
20 Hb_000566_050 0.199844086 - - PREDICTED: uncharacterized protein LOC105644845 [Jatropha curcas]

Gene co-expression network

sample Hb_000030_160 Hb_000030_160 Hb_004032_160 Hb_004032_160 Hb_000030_160--Hb_004032_160 Hb_005784_070 Hb_005784_070 Hb_000030_160--Hb_005784_070 Hb_000883_170 Hb_000883_170 Hb_000030_160--Hb_000883_170 Hb_000009_220 Hb_000009_220 Hb_000030_160--Hb_000009_220 Hb_004003_030 Hb_004003_030 Hb_000030_160--Hb_004003_030 Hb_007793_050 Hb_007793_050 Hb_000030_160--Hb_007793_050 Hb_004032_160--Hb_005784_070 Hb_001268_340 Hb_001268_340 Hb_004032_160--Hb_001268_340 Hb_001519_040 Hb_001519_040 Hb_004032_160--Hb_001519_040 Hb_001195_640 Hb_001195_640 Hb_004032_160--Hb_001195_640 Hb_001053_190 Hb_001053_190 Hb_004032_160--Hb_001053_190 Hb_000913_030 Hb_000913_030 Hb_005784_070--Hb_000913_030 Hb_005784_070--Hb_001053_190 Hb_006120_040 Hb_006120_040 Hb_005784_070--Hb_006120_040 Hb_016448_010 Hb_016448_010 Hb_005784_070--Hb_016448_010 Hb_004712_190 Hb_004712_190 Hb_005784_070--Hb_004712_190 Hb_005144_210 Hb_005144_210 Hb_000883_170--Hb_005144_210 Hb_001369_470 Hb_001369_470 Hb_000883_170--Hb_001369_470 Hb_000098_030 Hb_000098_030 Hb_000883_170--Hb_000098_030 Hb_000098_150 Hb_000098_150 Hb_000883_170--Hb_000098_150 Hb_001863_160 Hb_001863_160 Hb_000883_170--Hb_001863_160 Hb_003050_260 Hb_003050_260 Hb_000883_170--Hb_003050_260 Hb_014231_020 Hb_014231_020 Hb_000009_220--Hb_014231_020 Hb_000979_060 Hb_000979_060 Hb_000009_220--Hb_000979_060 Hb_011915_040 Hb_011915_040 Hb_000009_220--Hb_011915_040 Hb_000684_100 Hb_000684_100 Hb_000009_220--Hb_000684_100 Hb_156635_020 Hb_156635_020 Hb_000009_220--Hb_156635_020 Hb_000086_430 Hb_000086_430 Hb_000009_220--Hb_000086_430 Hb_000566_050 Hb_000566_050 Hb_004003_030--Hb_000566_050 Hb_001799_160 Hb_001799_160 Hb_004003_030--Hb_001799_160 Hb_000787_080 Hb_000787_080 Hb_004003_030--Hb_000787_080 Hb_000003_680 Hb_000003_680 Hb_004003_030--Hb_000003_680 Hb_021576_150 Hb_021576_150 Hb_004003_030--Hb_021576_150 Hb_000318_220 Hb_000318_220 Hb_004003_030--Hb_000318_220 Hb_007793_050--Hb_004003_030 Hb_007793_050--Hb_001268_340 Hb_007793_050--Hb_004032_160 Hb_001148_060 Hb_001148_060 Hb_007793_050--Hb_001148_060 Hb_002903_100 Hb_002903_100 Hb_007793_050--Hb_002903_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
24.8824 15.2451 43.693 23.7576 3.50619 3.94188
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.07784 2.8862 13.5544 9.12038 9.45042

CAGE analysis