Hb_000030_180

Information

Type -
Description -
Location Contig30: 146446-153105
Sequence    

Annotation

kegg
ID rcu:RCOM_1121850
description endonuclease, putative
nr
ID XP_012070474.1
description PREDICTED: uncharacterized protein LOC105632645 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KUE0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02737 PE=4 SV=1
Gene Ontology
ID GO:0003676
description hnh endonuclease

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31506: 153803-157789 , PASA_asmbl_31510: 146690-152904 , PASA_asmbl_31511: 146690-152904 , PASA_asmbl_31512: 149528-154534 , PASA_asmbl_31513: 153635-157735
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000030_180 0.0 - - PREDICTED: uncharacterized protein LOC105632645 isoform X1 [Jatropha curcas]
2 Hb_001234_080 0.089203459 - - PREDICTED: eyes absent homolog 2-like isoform X2 [Musa acuminata subsp. malaccensis]
3 Hb_009694_010 0.0894288752 - - conserved hypothetical protein [Ricinus communis]
4 Hb_004837_030 0.1020918845 - - PREDICTED: mitochondrial tRNA-specific 2-thiouridylase 1 [Jatropha curcas]
5 Hb_004096_090 0.1021012018 - - Plastid-specific 30S ribosomal protein 3, chloroplast precursor, putative [Ricinus communis]
6 Hb_028227_020 0.1040454123 - - PREDICTED: alpha-ketoglutarate-dependent dioxygenase alkB isoform X1 [Jatropha curcas]
7 Hb_002112_020 0.1042836817 - - 60S ribosomal protein L9, putative [Ricinus communis]
8 Hb_007163_070 0.1049292892 - - PREDICTED: tRNA-dihydrouridine(20) synthase [NAD(P)+]-like isoform X1 [Jatropha curcas]
9 Hb_001579_270 0.1072162916 - - PREDICTED: phosphatidylinositol 3-kinase, root isoform isoform X1 [Jatropha curcas]
10 Hb_005697_060 0.107914216 transcription factor TF Family: HB PREDICTED: pathogenesis-related homeodomain protein isoform X1 [Jatropha curcas]
11 Hb_001157_020 0.1079297374 - - PREDICTED: uncharacterized protein LOC105649844 isoform X1 [Jatropha curcas]
12 Hb_010222_020 0.1085034239 - - PREDICTED: uncharacterized protein LOC105647642 [Jatropha curcas]
13 Hb_000465_090 0.1093910167 - - PREDICTED: uncharacterized protein LOC105632289 [Jatropha curcas]
14 Hb_000272_020 0.1107351852 - - oxidoreductase, putative [Ricinus communis]
15 Hb_000094_330 0.1113138216 - - PREDICTED: COP9 signalosome complex subunit 4 [Jatropha curcas]
16 Hb_003942_020 0.1113149097 - - PREDICTED: multiple RNA-binding domain-containing protein 1 isoform X1 [Jatropha curcas]
17 Hb_002253_100 0.1113969113 - - PREDICTED: uncharacterized protein At1g04910 isoform X2 [Jatropha curcas]
18 Hb_005847_060 0.112810012 - - hypothetical protein POPTR_0006s02920g [Populus trichocarpa]
19 Hb_000529_030 0.1140201769 - - PREDICTED: protein CURVATURE THYLAKOID 1D, chloroplastic isoform X1 [Jatropha curcas]
20 Hb_010921_010 0.1144136719 - - Small nuclear ribonucleoprotein family protein [Theobroma cacao]

Gene co-expression network

sample Hb_000030_180 Hb_000030_180 Hb_001234_080 Hb_001234_080 Hb_000030_180--Hb_001234_080 Hb_009694_010 Hb_009694_010 Hb_000030_180--Hb_009694_010 Hb_004837_030 Hb_004837_030 Hb_000030_180--Hb_004837_030 Hb_004096_090 Hb_004096_090 Hb_000030_180--Hb_004096_090 Hb_028227_020 Hb_028227_020 Hb_000030_180--Hb_028227_020 Hb_002112_020 Hb_002112_020 Hb_000030_180--Hb_002112_020 Hb_001234_080--Hb_028227_020 Hb_000960_060 Hb_000960_060 Hb_001234_080--Hb_000960_060 Hb_001489_060 Hb_001489_060 Hb_001234_080--Hb_001489_060 Hb_001234_080--Hb_009694_010 Hb_001512_060 Hb_001512_060 Hb_001234_080--Hb_001512_060 Hb_001564_130 Hb_001564_130 Hb_001234_080--Hb_001564_130 Hb_009694_010--Hb_028227_020 Hb_000465_090 Hb_000465_090 Hb_009694_010--Hb_000465_090 Hb_009694_010--Hb_004096_090 Hb_001157_020 Hb_001157_020 Hb_009694_010--Hb_001157_020 Hb_007632_030 Hb_007632_030 Hb_009694_010--Hb_007632_030 Hb_005697_060 Hb_005697_060 Hb_009694_010--Hb_005697_060 Hb_004837_030--Hb_009694_010 Hb_163950_030 Hb_163950_030 Hb_004837_030--Hb_163950_030 Hb_004837_030--Hb_007632_030 Hb_004837_030--Hb_028227_020 Hb_002893_070 Hb_002893_070 Hb_004837_030--Hb_002893_070 Hb_001348_180 Hb_001348_180 Hb_004837_030--Hb_001348_180 Hb_001195_480 Hb_001195_480 Hb_004096_090--Hb_001195_480 Hb_004116_060 Hb_004116_060 Hb_004096_090--Hb_004116_060 Hb_005054_060 Hb_005054_060 Hb_004096_090--Hb_005054_060 Hb_000633_020 Hb_000633_020 Hb_004096_090--Hb_000633_020 Hb_010222_020 Hb_010222_020 Hb_004096_090--Hb_010222_020 Hb_028227_020--Hb_001157_020 Hb_028227_020--Hb_005697_060 Hb_012725_050 Hb_012725_050 Hb_028227_020--Hb_012725_050 Hb_001936_080 Hb_001936_080 Hb_028227_020--Hb_001936_080 Hb_000120_790 Hb_000120_790 Hb_028227_020--Hb_000120_790 Hb_001504_020 Hb_001504_020 Hb_002112_020--Hb_001504_020 Hb_021419_020 Hb_021419_020 Hb_002112_020--Hb_021419_020 Hb_010921_010 Hb_010921_010 Hb_002112_020--Hb_010921_010 Hb_002660_080 Hb_002660_080 Hb_002112_020--Hb_002660_080 Hb_128048_010 Hb_128048_010 Hb_002112_020--Hb_128048_010 Hb_175215_010 Hb_175215_010 Hb_002112_020--Hb_175215_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.06101 1.606 4.36432 3.3715 4.40742 5.22883
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.89931 10.3306 2.38807 2.41747 4.75302

CAGE analysis