Hb_000030_200

Information

Type -
Description -
Location Contig30: 159885-161857
Sequence    

Annotation

kegg
ID pop:POPTR_0019s04930g
description POPTRDRAFT_573913; hypothetical protein
nr
ID XP_011010128.1
description PREDICTED: early nodulin-93-like [Populus euphratica]
swissprot
ID Q02921
description Early nodulin-93 OS=Glycine max PE=2 SV=1
trembl
ID A9PA20
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0019s04930g PE=2 SV=1
Gene Ontology
ID GO:0005739
description early nodulin-93-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31515: 159894-161864
cDNA
(Sanger)
(ID:Location)		 019_M09.ab1: 159940-161817 , 025_L05.ab1: 159896-161833 , 041_B10.ab1: 159954-161833 , 044_E23.ab1: 159915-161833 , 049_O21.ab1: 160202-161816

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000030_200 0.0 - - PREDICTED: early nodulin-93-like [Populus euphratica]
2 Hb_000087_130 0.0700539653 - - PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial [Jatropha curcas]
3 Hb_072922_020 0.0799721696 - - SNARE-like superfamily protein [Theobroma cacao]
4 Hb_000948_220 0.0867986488 - - hypothetical protein CICLE_v10013189mg [Citrus clementina]
5 Hb_000384_120 0.0898038698 transcription factor TF Family: Whirly PREDICTED: single-stranded DNA-bindig protein WHY2, mitochondrial [Jatropha curcas]
6 Hb_001155_040 0.1007935735 - - PREDICTED: cytochrome b-c1 complex subunit 8 [Eucalyptus grandis]
7 Hb_010560_030 0.1014586919 - - PREDICTED: mitochondrial pyruvate carrier 4-like [Jatropha curcas]
8 Hb_006915_040 0.1040903694 - - PREDICTED: prefoldin subunit 6 [Eucalyptus grandis]
9 Hb_003880_030 0.1042539686 - - PREDICTED: protein TIC 21, chloroplastic [Jatropha curcas]
10 Hb_005307_050 0.1045845567 - - PREDICTED: uncharacterized protein LOC105645274 [Jatropha curcas]
11 Hb_007441_300 0.1050530865 - - ATP binding protein, putative [Ricinus communis]
12 Hb_000768_130 0.1053368681 transcription factor TF Family: SWI/SNF-BAF60b PREDICTED: protein TRI1 [Jatropha curcas]
13 Hb_005463_140 0.1066385755 - - PREDICTED: histone deacetylase complex subunit SAP18 [Jatropha curcas]
14 Hb_002000_140 0.1104332216 - - PREDICTED: thioredoxin Y2, chloroplastic [Jatropha curcas]
15 Hb_002324_010 0.1110253176 - - PREDICTED: proteasome subunit alpha type-7 [Jatropha curcas]
16 Hb_007441_260 0.1111480587 - - PREDICTED: ATP synthase subunit delta', mitochondrial-like [Jatropha curcas]
17 Hb_000445_490 0.1139709876 - - -
18 Hb_000215_330 0.1148348622 - - PREDICTED: AP-4 complex subunit sigma [Jatropha curcas]
19 Hb_005045_070 0.1150959884 - - PREDICTED: deSI-like protein At4g17486 [Jatropha curcas]
20 Hb_001053_140 0.1151485516 - - PREDICTED: ATP synthase subunit O, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_000030_200 Hb_000030_200 Hb_000087_130 Hb_000087_130 Hb_000030_200--Hb_000087_130 Hb_072922_020 Hb_072922_020 Hb_000030_200--Hb_072922_020 Hb_000948_220 Hb_000948_220 Hb_000030_200--Hb_000948_220 Hb_000384_120 Hb_000384_120 Hb_000030_200--Hb_000384_120 Hb_001155_040 Hb_001155_040 Hb_000030_200--Hb_001155_040 Hb_010560_030 Hb_010560_030 Hb_000030_200--Hb_010560_030 Hb_000087_130--Hb_001155_040 Hb_000087_130--Hb_072922_020 Hb_006915_040 Hb_006915_040 Hb_000087_130--Hb_006915_040 Hb_000087_130--Hb_000948_220 Hb_000087_130--Hb_000384_120 Hb_005463_140 Hb_005463_140 Hb_072922_020--Hb_005463_140 Hb_072922_020--Hb_000384_120 Hb_000302_280 Hb_000302_280 Hb_072922_020--Hb_000302_280 Hb_000254_050 Hb_000254_050 Hb_072922_020--Hb_000254_050 Hb_000789_230 Hb_000789_230 Hb_072922_020--Hb_000789_230 Hb_007120_090 Hb_007120_090 Hb_000948_220--Hb_007120_090 Hb_002838_030 Hb_002838_030 Hb_000948_220--Hb_002838_030 Hb_000948_220--Hb_001155_040 Hb_000317_070 Hb_000317_070 Hb_000948_220--Hb_000317_070 Hb_174865_010 Hb_174865_010 Hb_000948_220--Hb_174865_010 Hb_000417_260 Hb_000417_260 Hb_000384_120--Hb_000417_260 Hb_003880_030 Hb_003880_030 Hb_000384_120--Hb_003880_030 Hb_000922_040 Hb_000922_040 Hb_000384_120--Hb_000922_040 Hb_005269_080 Hb_005269_080 Hb_000384_120--Hb_005269_080 Hb_002324_010 Hb_002324_010 Hb_000384_120--Hb_002324_010 Hb_006452_040 Hb_006452_040 Hb_001155_040--Hb_006452_040 Hb_001155_040--Hb_005463_140 Hb_000062_390 Hb_000062_390 Hb_001155_040--Hb_000062_390 Hb_007317_160 Hb_007317_160 Hb_001155_040--Hb_007317_160 Hb_000389_080 Hb_000389_080 Hb_001155_040--Hb_000389_080 Hb_001053_140 Hb_001053_140 Hb_010560_030--Hb_001053_140 Hb_000327_380 Hb_000327_380 Hb_010560_030--Hb_000327_380 Hb_000189_240 Hb_000189_240 Hb_010560_030--Hb_000189_240 Hb_000302_140 Hb_000302_140 Hb_010560_030--Hb_000302_140 Hb_002303_060 Hb_002303_060 Hb_010560_030--Hb_002303_060 Hb_010560_030--Hb_000087_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.8251 11.1533 22.5431 54.4552 11.2611 16.4686
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
85.3045 117.486 38.1921 34.7915 28.3957

CAGE analysis