Hb_000030_240

Information

Type -
Description -
Location Contig30: 193160-194218
Sequence    

Annotation

kegg
ID rcu:RCOM_1122040
description zinc finger protein, putative
nr
ID XP_002525456.1
description zinc finger protein, putative [Ricinus communis]
swissprot
ID Q8LPN7
description E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana GN=At3g19950 PE=1 SV=1
trembl
ID B9SHI7
description Zinc finger protein, putative OS=Ricinus communis GN=RCOM_1122040 PE=4 SV=1
Gene Ontology
ID GO:0008270
description e3 ubiquitin-protein ligase ring1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000030_240 0.0 - - zinc finger protein, putative [Ricinus communis]
2 Hb_001080_130 0.1548426677 - - catalase [Hevea brasiliensis]
3 Hb_000733_050 0.1645019902 - - PREDICTED: uncharacterized protein LOC105646910 isoform X2 [Jatropha curcas]
4 Hb_000221_120 0.1754950954 - - PREDICTED: uncharacterized protein At1g04910 isoform X2 [Jatropha curcas]
5 Hb_078477_050 0.1806028737 transcription factor TF Family: Orphans PREDICTED: uncharacterized protein LOC105648332 isoform X1 [Jatropha curcas]
6 Hb_009485_020 0.1918010218 - - PREDICTED: membrane steroid-binding protein 2-like [Jatropha curcas]
7 Hb_000258_290 0.1979901828 transcription factor TF Family: TCP PREDICTED: transcription factor TCP15 [Jatropha curcas]
8 Hb_008177_030 0.2017845881 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
9 Hb_130323_010 0.2053069165 - - Myosin heavy chain, fast skeletal muscle, embryonic, putative [Ricinus communis]
10 Hb_001486_070 0.2068264018 - - PREDICTED: 5'-adenylylsulfate reductase-like 7 [Jatropha curcas]
11 Hb_029866_100 0.208345558 - - PREDICTED: probable beta-1,3-galactosyltransferase 11 [Jatropha curcas]
12 Hb_074197_020 0.212519148 - - PREDICTED: uncharacterized protein LOC105645948 [Jatropha curcas]
13 Hb_007157_060 0.2130603213 - - PREDICTED: subtilisin-like protease SBT1.7 [Jatropha curcas]
14 Hb_002192_030 0.2180677471 - - conserved hypothetical protein [Ricinus communis]
15 Hb_006508_030 0.22077909 - - PREDICTED: CDPK-related kinase 1-like [Jatropha curcas]
16 Hb_000091_060 0.2242638686 - - PREDICTED: galactose oxidase [Jatropha curcas]
17 Hb_000376_090 0.228434775 - - Myosin heavy chain, fast skeletal muscle, embryonic, putative [Ricinus communis]
18 Hb_011953_030 0.2310744883 transcription factor TF Family: C2C2-Dof hypothetical protein POPTR_0003s14450g [Populus trichocarpa]
19 Hb_004875_030 0.2336957373 - - PREDICTED: signal peptide peptidase-like 2 [Jatropha curcas]
20 Hb_002235_130 0.2344374264 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000030_240 Hb_000030_240 Hb_001080_130 Hb_001080_130 Hb_000030_240--Hb_001080_130 Hb_000733_050 Hb_000733_050 Hb_000030_240--Hb_000733_050 Hb_000221_120 Hb_000221_120 Hb_000030_240--Hb_000221_120 Hb_078477_050 Hb_078477_050 Hb_000030_240--Hb_078477_050 Hb_009485_020 Hb_009485_020 Hb_000030_240--Hb_009485_020 Hb_000258_290 Hb_000258_290 Hb_000030_240--Hb_000258_290 Hb_001080_130--Hb_000221_120 Hb_150346_010 Hb_150346_010 Hb_001080_130--Hb_150346_010 Hb_000140_450 Hb_000140_450 Hb_001080_130--Hb_000140_450 Hb_000500_080 Hb_000500_080 Hb_001080_130--Hb_000500_080 Hb_006508_030 Hb_006508_030 Hb_001080_130--Hb_006508_030 Hb_029866_100 Hb_029866_100 Hb_000733_050--Hb_029866_100 Hb_000733_050--Hb_009485_020 Hb_002804_020 Hb_002804_020 Hb_000733_050--Hb_002804_020 Hb_002837_060 Hb_002837_060 Hb_000733_050--Hb_002837_060 Hb_116349_060 Hb_116349_060 Hb_000733_050--Hb_116349_060 Hb_003858_040 Hb_003858_040 Hb_000733_050--Hb_003858_040 Hb_006478_060 Hb_006478_060 Hb_000221_120--Hb_006478_060 Hb_004974_010 Hb_004974_010 Hb_000221_120--Hb_004974_010 Hb_000365_030 Hb_000365_030 Hb_000221_120--Hb_000365_030 Hb_001675_070 Hb_001675_070 Hb_000221_120--Hb_001675_070 Hb_001977_010 Hb_001977_010 Hb_000221_120--Hb_001977_010 Hb_008177_030 Hb_008177_030 Hb_078477_050--Hb_008177_030 Hb_001486_070 Hb_001486_070 Hb_078477_050--Hb_001486_070 Hb_001140_350 Hb_001140_350 Hb_078477_050--Hb_001140_350 Hb_001366_210 Hb_001366_210 Hb_078477_050--Hb_001366_210 Hb_002111_060 Hb_002111_060 Hb_078477_050--Hb_002111_060 Hb_080313_010 Hb_080313_010 Hb_078477_050--Hb_080313_010 Hb_009485_020--Hb_003858_040 Hb_001396_280 Hb_001396_280 Hb_009485_020--Hb_001396_280 Hb_009485_020--Hb_029866_100 Hb_003894_040 Hb_003894_040 Hb_009485_020--Hb_003894_040 Hb_130323_010 Hb_130323_010 Hb_009485_020--Hb_130323_010 Hb_000091_060 Hb_000091_060 Hb_000258_290--Hb_000091_060 Hb_074197_020 Hb_074197_020 Hb_000258_290--Hb_074197_020 Hb_005843_160 Hb_005843_160 Hb_000258_290--Hb_005843_160 Hb_000258_290--Hb_009485_020 Hb_000424_150 Hb_000424_150 Hb_000258_290--Hb_000424_150 Hb_002498_050 Hb_002498_050 Hb_000258_290--Hb_002498_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.8739 3.50267 2.45996 17.3397 10.4515 8.88111
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.31316 0.668345 1.23465 12.9137 3.50798

CAGE analysis