Hb_000030_290

Information

Type -
Description -
Location Contig30: 258399-263079
Sequence    

Annotation

kegg
ID vvi:100247068
description uncharacterized LOC100247068
nr
ID XP_010654319.1
description PREDICTED: uncharacterized protein LOC100247068 [Vitis vinifera]
swissprot
ID -
description -
trembl
ID A0A0B0NIY7
description RING finger 32 OS=Gossypium arboreum GN=F383_12986 PE=4 SV=1
Gene Ontology
ID GO:0008270
description ring u-box superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31527: 262045-262314
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000030_290 0.0 - - PREDICTED: uncharacterized protein LOC100247068 [Vitis vinifera]
2 Hb_009711_020 0.04919048 - - PREDICTED: uncharacterized protein LOC105647794 isoform X2 [Jatropha curcas]
3 Hb_001616_040 0.062611205 - - PREDICTED: uncharacterized protein LOC105644362 [Jatropha curcas]
4 Hb_153544_010 0.0792042572 - - PREDICTED: coiled-coil domain-containing protein 130-like [Populus euphratica]
5 Hb_000334_210 0.0808538474 - - PREDICTED: uncharacterized protein LOC105628719 isoform X1 [Jatropha curcas]
6 Hb_000331_470 0.0837520892 - - PREDICTED: uncharacterized protein LOC105136689 [Populus euphratica]
7 Hb_002609_210 0.0847131614 - - PREDICTED: pleckstrin homology domain-containing protein 1 [Jatropha curcas]
8 Hb_003226_100 0.0871422475 - - PREDICTED: 60S ribosomal protein L18-2 [Jatropha curcas]
9 Hb_004871_020 0.0876603251 transcription factor TF Family: SWI/SNF-BAF60b PREDICTED: protein TRI1 [Jatropha curcas]
10 Hb_010175_040 0.0921388652 - - PREDICTED: cytochrome c oxidase subunit 6a, mitochondrial [Jatropha curcas]
11 Hb_150651_040 0.0931896437 - - PREDICTED: random slug protein 5-like [Jatropha curcas]
12 Hb_002477_140 0.0951848476 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-3 isoform X1 [Jatropha curcas]
13 Hb_000340_570 0.0956645544 - - PREDICTED: RNA-binding protein BRN1 [Jatropha curcas]
14 Hb_000920_110 0.0965927455 - - PREDICTED: U3 small nucleolar ribonucleoprotein protein IMP4 [Jatropha curcas]
15 Hb_000342_100 0.0970766695 - - PREDICTED: PITH domain-containing protein 1 [Jatropha curcas]
16 Hb_143496_010 0.0975695741 - - PREDICTED: 40S ribosomal protein S3-3 [Glycine max]
17 Hb_005245_080 0.0977080892 - - PREDICTED: uncharacterized protein LOC105643645 isoform X2 [Jatropha curcas]
18 Hb_007317_150 0.0978036657 - - PREDICTED: 40S ribosomal protein S25 [Jatropha curcas]
19 Hb_017491_060 0.0981845751 - - PREDICTED: probable complex I intermediate-associated protein 30 isoform X2 [Jatropha curcas]
20 Hb_002110_120 0.099172242 - - PREDICTED: bet1-like protein At4g14600 [Jatropha curcas]

Gene co-expression network

sample Hb_000030_290 Hb_000030_290 Hb_009711_020 Hb_009711_020 Hb_000030_290--Hb_009711_020 Hb_001616_040 Hb_001616_040 Hb_000030_290--Hb_001616_040 Hb_153544_010 Hb_153544_010 Hb_000030_290--Hb_153544_010 Hb_000334_210 Hb_000334_210 Hb_000030_290--Hb_000334_210 Hb_000331_470 Hb_000331_470 Hb_000030_290--Hb_000331_470 Hb_002609_210 Hb_002609_210 Hb_000030_290--Hb_002609_210 Hb_009711_020--Hb_002609_210 Hb_009711_020--Hb_001616_040 Hb_009711_020--Hb_000334_210 Hb_002477_140 Hb_002477_140 Hb_009711_020--Hb_002477_140 Hb_004871_020 Hb_004871_020 Hb_009711_020--Hb_004871_020 Hb_000920_110 Hb_000920_110 Hb_001616_040--Hb_000920_110 Hb_006541_010 Hb_006541_010 Hb_001616_040--Hb_006541_010 Hb_001016_030 Hb_001016_030 Hb_001616_040--Hb_001016_030 Hb_010175_040 Hb_010175_040 Hb_001616_040--Hb_010175_040 Hb_003226_100 Hb_003226_100 Hb_001616_040--Hb_003226_100 Hb_153544_010--Hb_004871_020 Hb_000317_070 Hb_000317_070 Hb_153544_010--Hb_000317_070 Hb_000417_360 Hb_000417_360 Hb_153544_010--Hb_000417_360 Hb_091433_020 Hb_091433_020 Hb_153544_010--Hb_091433_020 Hb_143496_010 Hb_143496_010 Hb_153544_010--Hb_143496_010 Hb_000111_340 Hb_000111_340 Hb_000334_210--Hb_000111_340 Hb_003656_070 Hb_003656_070 Hb_000334_210--Hb_003656_070 Hb_001047_230 Hb_001047_230 Hb_000334_210--Hb_001047_230 Hb_003683_110 Hb_003683_110 Hb_000334_210--Hb_003683_110 Hb_000334_210--Hb_001616_040 Hb_000525_020 Hb_000525_020 Hb_000331_470--Hb_000525_020 Hb_003787_010 Hb_003787_010 Hb_000331_470--Hb_003787_010 Hb_006153_110 Hb_006153_110 Hb_000331_470--Hb_006153_110 Hb_001863_430 Hb_001863_430 Hb_000331_470--Hb_001863_430 Hb_010098_050 Hb_010098_050 Hb_000331_470--Hb_010098_050 Hb_000001_060 Hb_000001_060 Hb_000331_470--Hb_000001_060 Hb_005211_190 Hb_005211_190 Hb_002609_210--Hb_005211_190 Hb_009421_040 Hb_009421_040 Hb_002609_210--Hb_009421_040 Hb_000680_140 Hb_000680_140 Hb_002609_210--Hb_000680_140 Hb_002609_210--Hb_000334_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.65671 4.43497 6.42064 5.46482 6.1872 5.7701
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
18.0304 17.7909 7.22221 6.08556 4.43008

CAGE analysis