Hb_000030_300

Information

Type -
Description -
Location Contig30: 268567-270989
Sequence    

Annotation

kegg
ID rcu:RCOM_1122190
description Thioredoxin, putative
nr
ID XP_002525461.1
description Thioredoxin, putative [Ricinus communis]
swissprot
ID O64654
description Thioredoxin-like 1-1, chloroplastic OS=Arabidopsis thaliana GN=At1g08570 PE=2 SV=1
trembl
ID B9SHJ2
description Thioredoxin, putative OS=Ricinus communis GN=RCOM_1122190 PE=4 SV=1
Gene Ontology
ID GO:0009570
description thioredoxin-like 1- chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31529: 268879-270156
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000030_300 0.0 - - Thioredoxin, putative [Ricinus communis]
2 Hb_002026_180 0.0477468973 - - PREDICTED: uncharacterized protein LOC105645805 [Jatropha curcas]
3 Hb_002496_030 0.0518257976 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g69350, mitochondrial [Jatropha curcas]
4 Hb_003175_010 0.0542499648 - - PREDICTED: 39S ribosomal protein L4, mitochondrial [Jatropha curcas]
5 Hb_001242_060 0.0558179574 - - PREDICTED: uncharacterized protein LOC105139508 [Populus euphratica]
6 Hb_000808_270 0.0588308087 - - PREDICTED: lon protease homolog 1, mitochondrial [Jatropha curcas]
7 Hb_000926_280 0.0589328027 - - ubiquitin-activating enzyme E1, putative [Ricinus communis]
8 Hb_000629_010 0.0603268258 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 32 isoform X1 [Jatropha curcas]
9 Hb_003058_190 0.061689552 - - PREDICTED: uncharacterized protein LOC105628951 isoform X1 [Jatropha curcas]
10 Hb_002603_120 0.0625981164 - - PREDICTED: nuclear pore complex protein NUP88 [Jatropha curcas]
11 Hb_003092_040 0.0636065682 - - PREDICTED: calmodulin-binding receptor-like cytoplasmic kinase 3 isoform X2 [Pyrus x bretschneideri]
12 Hb_002016_110 0.0645860853 - - transducin family protein [Populus trichocarpa]
13 Hb_003464_060 0.0659361239 - - PREDICTED: F-box protein PP2-A15 [Jatropha curcas]
14 Hb_000016_250 0.0663570643 - - unnamed protein product [Malassezia sympodialis ATCC 42132]
15 Hb_007416_280 0.0673004367 - - conserved hypothetical protein [Ricinus communis]
16 Hb_001595_030 0.0675262557 - - PREDICTED: nuclear inhibitor of protein phosphatase 1 isoform X1 [Jatropha curcas]
17 Hb_005663_060 0.067709726 - - PREDICTED: uncharacterized protein LOC105770600 [Gossypium raimondii]
18 Hb_003766_040 0.0684494612 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
19 Hb_004109_090 0.0697486929 - - ubiquitin-protein ligase, putative [Ricinus communis]
20 Hb_003615_010 0.0702812979 - - 60S ribosomal protein L8, putative [Ricinus communis]

Gene co-expression network

sample Hb_000030_300 Hb_000030_300 Hb_002026_180 Hb_002026_180 Hb_000030_300--Hb_002026_180 Hb_002496_030 Hb_002496_030 Hb_000030_300--Hb_002496_030 Hb_003175_010 Hb_003175_010 Hb_000030_300--Hb_003175_010 Hb_001242_060 Hb_001242_060 Hb_000030_300--Hb_001242_060 Hb_000808_270 Hb_000808_270 Hb_000030_300--Hb_000808_270 Hb_000926_280 Hb_000926_280 Hb_000030_300--Hb_000926_280 Hb_002016_110 Hb_002016_110 Hb_002026_180--Hb_002016_110 Hb_007416_280 Hb_007416_280 Hb_002026_180--Hb_007416_280 Hb_000571_120 Hb_000571_120 Hb_002026_180--Hb_000571_120 Hb_003766_040 Hb_003766_040 Hb_002026_180--Hb_003766_040 Hb_189003_080 Hb_189003_080 Hb_002026_180--Hb_189003_080 Hb_000453_170 Hb_000453_170 Hb_002496_030--Hb_000453_170 Hb_001269_550 Hb_001269_550 Hb_002496_030--Hb_001269_550 Hb_004837_040 Hb_004837_040 Hb_002496_030--Hb_004837_040 Hb_007951_050 Hb_007951_050 Hb_002496_030--Hb_007951_050 Hb_000392_300 Hb_000392_300 Hb_002496_030--Hb_000392_300 Hb_003175_010--Hb_000808_270 Hb_003175_010--Hb_000926_280 Hb_019280_040 Hb_019280_040 Hb_003175_010--Hb_019280_040 Hb_003175_010--Hb_003766_040 Hb_048937_040 Hb_048937_040 Hb_003175_010--Hb_048937_040 Hb_031527_040 Hb_031527_040 Hb_001242_060--Hb_031527_040 Hb_000757_060 Hb_000757_060 Hb_001242_060--Hb_000757_060 Hb_000016_250 Hb_000016_250 Hb_001242_060--Hb_000016_250 Hb_000563_320 Hb_000563_320 Hb_001242_060--Hb_000563_320 Hb_005779_060 Hb_005779_060 Hb_001242_060--Hb_005779_060 Hb_006827_020 Hb_006827_020 Hb_000808_270--Hb_006827_020 Hb_001677_210 Hb_001677_210 Hb_000808_270--Hb_001677_210 Hb_007317_110 Hb_007317_110 Hb_000808_270--Hb_007317_110 Hb_143629_210 Hb_143629_210 Hb_000808_270--Hb_143629_210 Hb_000629_010 Hb_000629_010 Hb_000808_270--Hb_000629_010 Hb_007951_060 Hb_007951_060 Hb_000926_280--Hb_007951_060 Hb_011689_080 Hb_011689_080 Hb_000926_280--Hb_011689_080 Hb_002391_300 Hb_002391_300 Hb_000926_280--Hb_002391_300 Hb_000327_120 Hb_000327_120 Hb_000926_280--Hb_000327_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
27.6165 19.1603 15.4315 12.8867 26.9673 34.2975
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
28.0327 30.7515 34.2246 20.7093 11.9847

CAGE analysis