Hb_000031_060

Information

Type -
Description -
Location Contig31: 66219-68846
Sequence    

Annotation

kegg
ID rcu:RCOM_0918520
description ring finger protein, putative
nr
ID XP_012076340.1
description PREDICTED: E3 ubiquitin-protein ligase RNF12-A-like [Jatropha curcas]
swissprot
ID Q7XTV7
description Probable E3 ubiquitin-protein ligase HIP1 OS=Oryza sativa subsp. japonica GN=HIP1 PE=1 SV=2
trembl
ID A0A067KEL6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07019 PE=4 SV=1
Gene Ontology
ID GO:0005515
description e3 ubiquitin-protein ligase rnf12-a-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32774: 66220-66598 , PASA_asmbl_32775: 67677-68821
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000031_060 0.0 - - PREDICTED: E3 ubiquitin-protein ligase RNF12-A-like [Jatropha curcas]
2 Hb_000445_180 0.066252159 transcription factor TF Family: TRAF PREDICTED: BTB/POZ domain-containing protein At4g08455 [Jatropha curcas]
3 Hb_011671_430 0.0732655035 - - PREDICTED: uncharacterized protein LOC105648668 [Jatropha curcas]
4 Hb_000127_130 0.077613165 - - PREDICTED: uncharacterized protein LOC105635483 [Jatropha curcas]
5 Hb_000521_320 0.0776622802 - - hypothetical protein POPTR_0001s23520g [Populus trichocarpa]
6 Hb_000059_330 0.0806194677 - - PREDICTED: polyadenylate-binding protein 1 [Jatropha curcas]
7 Hb_003092_040 0.0816031034 - - PREDICTED: calmodulin-binding receptor-like cytoplasmic kinase 3 isoform X2 [Pyrus x bretschneideri]
8 Hb_000613_090 0.0838269224 - - PREDICTED: uncharacterized protein LOC105641542 isoform X1 [Jatropha curcas]
9 Hb_002950_100 0.0843025423 desease resistance Gene Name: AAA PREDICTED: 26S protease regulatory subunit 6B homolog [Jatropha curcas]
10 Hb_006922_100 0.084902401 - - PREDICTED: uncharacterized protein LOC105645470 isoform X1 [Jatropha curcas]
11 Hb_001595_030 0.0852677875 - - PREDICTED: nuclear inhibitor of protein phosphatase 1 isoform X1 [Jatropha curcas]
12 Hb_003057_100 0.0863203793 - - PREDICTED: LOW QUALITY PROTEIN: S-adenosylmethionine mitochondrial carrier protein-like [Malus domestica]
13 Hb_011883_010 0.0871607246 - - PREDICTED: RNA-binding protein 7 isoform X1 [Jatropha curcas]
14 Hb_033153_050 0.0883184094 transcription factor TF Family: VOZ conserved hypothetical protein [Ricinus communis]
15 Hb_000510_130 0.0888059214 - - PREDICTED: PRA1 family protein F2-like [Jatropha curcas]
16 Hb_005993_020 0.0890575525 - - PREDICTED: uncharacterized protein LOC105649970 [Jatropha curcas]
17 Hb_017224_030 0.089335776 - - PREDICTED: A-agglutinin anchorage subunit [Jatropha curcas]
18 Hb_000679_010 0.0895767509 - - PREDICTED: uncharacterized protein LOC105637663 [Jatropha curcas]
19 Hb_001252_010 0.0898890978 - - hypothetical protein JCGZ_01389 [Jatropha curcas]
20 Hb_005000_210 0.0905449837 - - PREDICTED: translation machinery-associated protein 22 [Jatropha curcas]

Gene co-expression network

sample Hb_000031_060 Hb_000031_060 Hb_000445_180 Hb_000445_180 Hb_000031_060--Hb_000445_180 Hb_011671_430 Hb_011671_430 Hb_000031_060--Hb_011671_430 Hb_000127_130 Hb_000127_130 Hb_000031_060--Hb_000127_130 Hb_000521_320 Hb_000521_320 Hb_000031_060--Hb_000521_320 Hb_000059_330 Hb_000059_330 Hb_000031_060--Hb_000059_330 Hb_003092_040 Hb_003092_040 Hb_000031_060--Hb_003092_040 Hb_005941_040 Hb_005941_040 Hb_000445_180--Hb_005941_040 Hb_009615_150 Hb_009615_150 Hb_000445_180--Hb_009615_150 Hb_000224_170 Hb_000224_170 Hb_000445_180--Hb_000224_170 Hb_126643_020 Hb_126643_020 Hb_000445_180--Hb_126643_020 Hb_001623_420 Hb_001623_420 Hb_000445_180--Hb_001623_420 Hb_000038_170 Hb_000038_170 Hb_011671_430--Hb_000038_170 Hb_004577_020 Hb_004577_020 Hb_011671_430--Hb_004577_020 Hb_014497_050 Hb_014497_050 Hb_011671_430--Hb_014497_050 Hb_003058_190 Hb_003058_190 Hb_011671_430--Hb_003058_190 Hb_004355_020 Hb_004355_020 Hb_011671_430--Hb_004355_020 Hb_003158_010 Hb_003158_010 Hb_011671_430--Hb_003158_010 Hb_002256_030 Hb_002256_030 Hb_000127_130--Hb_002256_030 Hb_002685_010 Hb_002685_010 Hb_000127_130--Hb_002685_010 Hb_109092_010 Hb_109092_010 Hb_000127_130--Hb_109092_010 Hb_000139_410 Hb_000139_410 Hb_000127_130--Hb_000139_410 Hb_001488_070 Hb_001488_070 Hb_000127_130--Hb_001488_070 Hb_000302_270 Hb_000302_270 Hb_000521_320--Hb_000302_270 Hb_000010_400 Hb_000010_400 Hb_000521_320--Hb_000010_400 Hb_004678_040 Hb_004678_040 Hb_000521_320--Hb_004678_040 Hb_002950_100 Hb_002950_100 Hb_000521_320--Hb_002950_100 Hb_011995_010 Hb_011995_010 Hb_000521_320--Hb_011995_010 Hb_025645_010 Hb_025645_010 Hb_000521_320--Hb_025645_010 Hb_096563_010 Hb_096563_010 Hb_000059_330--Hb_096563_010 Hb_001259_090 Hb_001259_090 Hb_000059_330--Hb_001259_090 Hb_003428_030 Hb_003428_030 Hb_000059_330--Hb_003428_030 Hb_000059_330--Hb_003092_040 Hb_024071_020 Hb_024071_020 Hb_000059_330--Hb_024071_020 Hb_004310_130 Hb_004310_130 Hb_000059_330--Hb_004310_130 Hb_007416_280 Hb_007416_280 Hb_003092_040--Hb_007416_280 Hb_005663_060 Hb_005663_060 Hb_003092_040--Hb_005663_060 Hb_000510_130 Hb_000510_130 Hb_003092_040--Hb_000510_130 Hb_007691_030 Hb_007691_030 Hb_003092_040--Hb_007691_030 Hb_032202_190 Hb_032202_190 Hb_003092_040--Hb_032202_190 Hb_003126_050 Hb_003126_050 Hb_003092_040--Hb_003126_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
18.6264 13.1131 7.23028 9.73537 12.6089 13.3712
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
19.9265 13.6832 14.966 7.30113 4.81918

CAGE analysis