Hb_000031_130

Information

Type -
Description -
Location Contig31: 105791-108984
Sequence    

Annotation

kegg
ID pop:POPTR_0006s28780g
description hypothetical protein
nr
ID XP_011031375.1
description PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Populus euphratica]
swissprot
ID C0LGP4
description Probable LRR receptor-like serine/threonine-protein kinase At3g47570 OS=Arabidopsis thaliana GN=At3g47570 PE=2 SV=1
trembl
ID B9N676
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s28780g PE=3 SV=1
Gene Ontology
ID GO:0004672
description probable lrr receptor-like serine threonine-protein kinase at3g47570

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000031_130 0.0 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Populus euphratica]
2 Hb_001376_040 0.0513427341 transcription factor TF Family: MYB PREDICTED: transcription factor MYB86 [Populus euphratica]
3 Hb_001114_210 0.0710452643 - - PREDICTED: periaxin [Jatropha curcas]
4 Hb_000116_390 0.0751944582 - - Mlo protein [Hevea brasiliensis]
5 Hb_004656_020 0.0788049805 - - EF hand domain-containing protein, variant [Neurospora crassa OR74A]
6 Hb_008616_020 0.0837682289 - - unnamed protein product [Vitis vinifera]
7 Hb_000185_060 0.090651483 - - PREDICTED: short-chain dehydrogenase TIC 32, chloroplastic [Jatropha curcas]
8 Hb_032443_030 0.0957822997 - - PREDICTED: protein SRG1-like [Jatropha curcas]
9 Hb_005649_120 0.0961391636 - - Anthocyanin 5-aromatic acyltransferase, putative [Ricinus communis]
10 Hb_049562_010 0.1007390991 - - hypothetical protein JCGZ_25442 [Jatropha curcas]
11 Hb_003253_060 0.1078665613 - - PREDICTED: tropinone reductase-like 1 [Vitis vinifera]
12 Hb_008062_020 0.108246063 - - PREDICTED: periaxin-like [Populus euphratica]
13 Hb_001953_130 0.1096792457 - - PREDICTED: uncharacterized protein LOC105648901 [Jatropha curcas]
14 Hb_009083_080 0.1110485962 - - conserved hypothetical protein [Ricinus communis]
15 Hb_008053_070 0.112820233 - - PREDICTED: U-box domain-containing protein 33-like isoform X4 [Jatropha curcas]
16 Hb_003385_090 0.1137831014 - - hypothetical protein JCGZ_08917 [Jatropha curcas]
17 Hb_002986_110 0.1142490646 - - PREDICTED: patatin-like protein 1 [Jatropha curcas]
18 Hb_002677_010 0.1145088322 transcription factor TF Family: MYB-related PREDICTED: transcription factor RAX2 [Populus euphratica]
19 Hb_001080_040 0.1163357789 - - cytochrome P450, putative [Ricinus communis]
20 Hb_000535_030 0.119961479 - - PREDICTED: premnaspirodiene oxygenase-like [Jatropha curcas]

Gene co-expression network

sample Hb_000031_130 Hb_000031_130 Hb_001376_040 Hb_001376_040 Hb_000031_130--Hb_001376_040 Hb_001114_210 Hb_001114_210 Hb_000031_130--Hb_001114_210 Hb_000116_390 Hb_000116_390 Hb_000031_130--Hb_000116_390 Hb_004656_020 Hb_004656_020 Hb_000031_130--Hb_004656_020 Hb_008616_020 Hb_008616_020 Hb_000031_130--Hb_008616_020 Hb_000185_060 Hb_000185_060 Hb_000031_130--Hb_000185_060 Hb_001376_040--Hb_008616_020 Hb_001376_040--Hb_001114_210 Hb_032443_030 Hb_032443_030 Hb_001376_040--Hb_032443_030 Hb_001376_040--Hb_004656_020 Hb_005649_120 Hb_005649_120 Hb_001376_040--Hb_005649_120 Hb_049562_010 Hb_049562_010 Hb_001114_210--Hb_049562_010 Hb_001114_210--Hb_005649_120 Hb_001080_040 Hb_001080_040 Hb_001114_210--Hb_001080_040 Hb_008062_020 Hb_008062_020 Hb_001114_210--Hb_008062_020 Hb_001953_130 Hb_001953_130 Hb_000116_390--Hb_001953_130 Hb_000116_390--Hb_001376_040 Hb_000116_390--Hb_001114_210 Hb_000116_390--Hb_008616_020 Hb_000116_390--Hb_000185_060 Hb_003253_060 Hb_003253_060 Hb_004656_020--Hb_003253_060 Hb_009083_080 Hb_009083_080 Hb_004656_020--Hb_009083_080 Hb_004656_020--Hb_032443_030 Hb_004656_020--Hb_001114_210 Hb_008616_020--Hb_000185_060 Hb_002677_010 Hb_002677_010 Hb_008616_020--Hb_002677_010 Hb_032582_010 Hb_032582_010 Hb_008616_020--Hb_032582_010 Hb_008053_070 Hb_008053_070 Hb_008616_020--Hb_008053_070 Hb_000905_030 Hb_000905_030 Hb_008616_020--Hb_000905_030 Hb_000185_060--Hb_002677_010 Hb_000185_060--Hb_032582_010 Hb_000185_060--Hb_008053_070 Hb_181092_010 Hb_181092_010 Hb_000185_060--Hb_181092_010 Hb_000185_060--Hb_001376_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.788817 0.00986096 0.026289 0 0.00586146
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.617947 0

CAGE analysis