Hb_000031_200

Information

Type -
Description -
Location Contig31: 163301-165352
Sequence    

Annotation

kegg
ID vvi:100253745
description trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM1
nr
ID XP_012076356.1
description PREDICTED: trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM3-like [Jatropha curcas]
swissprot
ID Q9SYM5
description Trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM1 OS=Arabidopsis thaliana GN=RHM1 PE=1 SV=1
trembl
ID F6H9H8
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0069g00830 PE=4 SV=1
Gene Ontology
ID GO:0008460
description probable rhamnose biosynthetic enzyme 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000031_200 0.0 - - PREDICTED: trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM3-like [Jatropha curcas]
2 Hb_008918_030 0.1105176287 - - hypothetical protein POPTR_0001s08730g [Populus trichocarpa]
3 Hb_000879_260 0.1351511281 - - PREDICTED: F-box/kelch-repeat protein At5g43190 [Jatropha curcas]
4 Hb_007575_010 0.1491244288 - - PREDICTED: cytochrome P450 71A1 [Vitis vinifera]
5 Hb_144838_010 0.164834766 - - hypothetical protein JCGZ_08246 [Jatropha curcas]
6 Hb_000373_140 0.1861527965 - - PREDICTED: uncharacterized protein LOC105160092 [Sesamum indicum]
7 Hb_001508_010 0.1863353141 - - conserved hypothetical protein [Ricinus communis]
8 Hb_042463_030 0.1872537645 - - unknown [Lotus japonicus]
9 Hb_101462_010 0.1881747558 - - PREDICTED: probable receptor-like protein kinase At5g39030 isoform X2 [Jatropha curcas]
10 Hb_012753_070 0.1884642384 - - hypothetical protein VITISV_033646 [Vitis vinifera]
11 Hb_000060_070 0.188504151 - - hypothetical protein EUTSA_v10023188mg, partial [Eutrema salsugineum]
12 Hb_003414_040 0.1903864788 - - hypothetical protein VITISV_016691 [Vitis vinifera]
13 Hb_000432_020 0.1909572575 desease resistance Gene Name: Tropomyosin_1 PREDICTED: putative disease resistance protein RGA1 isoform X2 [Jatropha curcas]
14 Hb_000208_220 0.1932143038 - - -
15 Hb_002553_030 0.193539618 - - hypothetical protein POPTR_0008s16550g [Populus trichocarpa]
16 Hb_101733_010 0.1944367417 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000920_020 0.1961979515 - - OSJNBa0004L19.22 [Oryza sativa Japonica Group]
18 Hb_093388_010 0.1999258818 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1 [Jatropha curcas]
19 Hb_079902_010 0.2000048353 - - cytochrome c biogenesis B (mitochondrion) [Hevea brasiliensis]
20 Hb_161881_010 0.2001567454 - - laccase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000031_200 Hb_000031_200 Hb_008918_030 Hb_008918_030 Hb_000031_200--Hb_008918_030 Hb_000879_260 Hb_000879_260 Hb_000031_200--Hb_000879_260 Hb_007575_010 Hb_007575_010 Hb_000031_200--Hb_007575_010 Hb_144838_010 Hb_144838_010 Hb_000031_200--Hb_144838_010 Hb_000373_140 Hb_000373_140 Hb_000031_200--Hb_000373_140 Hb_001508_010 Hb_001508_010 Hb_000031_200--Hb_001508_010 Hb_008918_030--Hb_000879_260 Hb_004375_020 Hb_004375_020 Hb_008918_030--Hb_004375_020 Hb_042463_030 Hb_042463_030 Hb_008918_030--Hb_042463_030 Hb_008918_030--Hb_000373_140 Hb_004987_040 Hb_004987_040 Hb_008918_030--Hb_004987_040 Hb_000879_260--Hb_042463_030 Hb_000879_260--Hb_000373_140 Hb_101462_010 Hb_101462_010 Hb_000879_260--Hb_101462_010 Hb_077242_020 Hb_077242_020 Hb_000879_260--Hb_077242_020 Hb_079902_010 Hb_079902_010 Hb_000879_260--Hb_079902_010 Hb_000879_260--Hb_001508_010 Hb_007575_010--Hb_144838_010 Hb_017640_010 Hb_017640_010 Hb_007575_010--Hb_017640_010 Hb_001250_030 Hb_001250_030 Hb_007575_010--Hb_001250_030 Hb_003169_040 Hb_003169_040 Hb_007575_010--Hb_003169_040 Hb_004445_030 Hb_004445_030 Hb_007575_010--Hb_004445_030 Hb_144838_010--Hb_017640_010 Hb_002598_030 Hb_002598_030 Hb_144838_010--Hb_002598_030 Hb_000672_130 Hb_000672_130 Hb_144838_010--Hb_000672_130 Hb_147604_010 Hb_147604_010 Hb_144838_010--Hb_147604_010 Hb_144838_010--Hb_001250_030 Hb_000373_140--Hb_101462_010 Hb_004208_040 Hb_004208_040 Hb_000373_140--Hb_004208_040 Hb_000373_140--Hb_079902_010 Hb_000373_140--Hb_004987_040 Hb_000373_140--Hb_004375_020 Hb_000123_070 Hb_000123_070 Hb_000373_140--Hb_000123_070 Hb_001508_010--Hb_079902_010 Hb_001508_010--Hb_000373_140 Hb_001508_010--Hb_101462_010 Hb_002553_030 Hb_002553_030 Hb_001508_010--Hb_002553_030 Hb_002551_030 Hb_002551_030 Hb_001508_010--Hb_002551_030 Hb_001508_010--Hb_077242_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0249491 0.00747689 0.00775515 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0180172 0 0.00716893 0.304496

CAGE analysis