Hb_000031_220

Information

Type -
Description -
Location Contig31: 172733-178339
Sequence    

Annotation

kegg
ID pop:POPTR_0018s03410g
description POPTRDRAFT_578369; hypothetical protein
nr
ID XP_012076363.1
description PREDICTED: UDP-glycosyltransferase 73B4-like [Jatropha curcas]
swissprot
ID Q6K4N0
description Serine/arginine-rich splicing factor RSZ21 OS=Oryza sativa subsp. japonica GN=RSZP21 PE=2 SV=1
trembl
ID A0A067KBF2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07033 PE=3 SV=1
Gene Ontology
ID GO:0000166
description udp-glycosyltransferase 73b4-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32796: 174932-178232 , PASA_asmbl_32797: 174932-178483 , PASA_asmbl_32798: 176636-178232
cDNA
(Sanger)
(ID:Location)		 003_L16.ab1: 174935-175625 , 009_K03.ab1: 176870-177155

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000031_220 0.0 - - PREDICTED: UDP-glycosyltransferase 73B4-like [Jatropha curcas]
2 Hb_002982_040 0.0658277063 - - mta/sah nucleosidase, putative [Ricinus communis]
3 Hb_002027_270 0.0677836331 - - PREDICTED: serine/threonine-protein phosphatase BSL1 [Jatropha curcas]
4 Hb_002054_040 0.0743908816 - - PREDICTED: putative clathrin assembly protein At5g35200 [Jatropha curcas]
5 Hb_000260_220 0.0748987455 - - PREDICTED: RING finger and transmembrane domain-containing protein 2 isoform X1 [Jatropha curcas]
6 Hb_000003_480 0.0787417751 - - PREDICTED: nuclear pore complex protein NUP35 [Jatropha curcas]
7 Hb_002784_060 0.085205631 transcription factor TF Family: bZIP PREDICTED: transcription factor TGA6 isoform X1 [Jatropha curcas]
8 Hb_185830_020 0.0859324861 - - ABC transporter family protein [Hevea brasiliensis]
9 Hb_005731_120 0.0895228253 transcription factor TF Family: TCP PREDICTED: transcription factor TCP20 [Jatropha curcas]
10 Hb_001663_030 0.0907967696 - - PREDICTED: peroxisomal membrane protein 13 [Jatropha curcas]
11 Hb_000429_120 0.090992179 - - PREDICTED: DNA-directed RNA polymerase I subunit rpa1 [Jatropha curcas]
12 Hb_004619_050 0.0912148298 - - PREDICTED: phosphatidylinositol 4-phosphate 5-kinase 8-like isoform X2 [Jatropha curcas]
13 Hb_000212_240 0.0914752182 - - short-chain dehydrogenase, putative [Ricinus communis]
14 Hb_002374_050 0.0924997868 - - PREDICTED: auxilin-related protein 1 [Jatropha curcas]
15 Hb_004689_050 0.0932884641 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000166_110 0.0938587546 transcription factor TF Family: SNF2 PREDICTED: protein CHROMATIN REMODELING 25 [Jatropha curcas]
17 Hb_004881_020 0.0944326864 - - PREDICTED: serine/threonine-protein kinase rio2-like [Jatropha curcas]
18 Hb_148644_010 0.096146558 transcription factor TF Family: mTERF conserved hypothetical protein [Ricinus communis]
19 Hb_004032_150 0.0970895868 - - PREDICTED: chaperone protein dnaJ 10-like [Jatropha curcas]
20 Hb_006332_010 0.0976679567 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g10290 isoform X1 [Vitis vinifera]

Gene co-expression network

sample Hb_000031_220 Hb_000031_220 Hb_002982_040 Hb_002982_040 Hb_000031_220--Hb_002982_040 Hb_002027_270 Hb_002027_270 Hb_000031_220--Hb_002027_270 Hb_002054_040 Hb_002054_040 Hb_000031_220--Hb_002054_040 Hb_000260_220 Hb_000260_220 Hb_000031_220--Hb_000260_220 Hb_000003_480 Hb_000003_480 Hb_000031_220--Hb_000003_480 Hb_002784_060 Hb_002784_060 Hb_000031_220--Hb_002784_060 Hb_050455_010 Hb_050455_010 Hb_002982_040--Hb_050455_010 Hb_185830_020 Hb_185830_020 Hb_002982_040--Hb_185830_020 Hb_187739_020 Hb_187739_020 Hb_002982_040--Hb_187739_020 Hb_000866_030 Hb_000866_030 Hb_002982_040--Hb_000866_030 Hb_000069_160 Hb_000069_160 Hb_002982_040--Hb_000069_160 Hb_025012_010 Hb_025012_010 Hb_002027_270--Hb_025012_010 Hb_004619_050 Hb_004619_050 Hb_002027_270--Hb_004619_050 Hb_000567_050 Hb_000567_050 Hb_002027_270--Hb_000567_050 Hb_000600_070 Hb_000600_070 Hb_002027_270--Hb_000600_070 Hb_000429_120 Hb_000429_120 Hb_002027_270--Hb_000429_120 Hb_000166_110 Hb_000166_110 Hb_002054_040--Hb_000166_110 Hb_002054_040--Hb_000260_220 Hb_002374_050 Hb_002374_050 Hb_002054_040--Hb_002374_050 Hb_000134_090 Hb_000134_090 Hb_002054_040--Hb_000134_090 Hb_002054_040--Hb_002982_040 Hb_010931_120 Hb_010931_120 Hb_000260_220--Hb_010931_120 Hb_000260_220--Hb_002374_050 Hb_001663_030 Hb_001663_030 Hb_000260_220--Hb_001663_030 Hb_016657_010 Hb_016657_010 Hb_000260_220--Hb_016657_010 Hb_000003_480--Hb_000260_220 Hb_005054_290 Hb_005054_290 Hb_000003_480--Hb_005054_290 Hb_003847_080 Hb_003847_080 Hb_000003_480--Hb_003847_080 Hb_000003_480--Hb_002982_040 Hb_106724_020 Hb_106724_020 Hb_000003_480--Hb_106724_020 Hb_002784_060--Hb_000567_050 Hb_002784_060--Hb_002027_270 Hb_006114_030 Hb_006114_030 Hb_002784_060--Hb_006114_030 Hb_012490_030 Hb_012490_030 Hb_002784_060--Hb_012490_030 Hb_000212_240 Hb_000212_240 Hb_002784_060--Hb_000212_240
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.5825 12.0946 5.17988 13.8742 15.4967 34.6708
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
23.1607 11.5864 14.4462 14.7658 9.51954

CAGE analysis