Hb_000031_240

Information

Type -
Description -
Location Contig31: 189240-192615
Sequence    

Annotation

kegg
ID rcu:RCOM_0919500
description transferase, transferring glycosyl groups, putative
nr
ID XP_002515366.1
description transferase, transferring glycosyl groups, putative [Ricinus communis]
swissprot
ID Q9SB75
description Probable xyloglucan glycosyltransferase 5 OS=Arabidopsis thaliana GN=CSLC5 PE=1 SV=1
trembl
ID B9RNP7
description Transferase, transferring glycosyl groups, putative OS=Ricinus communis GN=RCOM_0919500 PE=4 SV=1
Gene Ontology
ID GO:0016740
description probable xyloglucan glycosyltransferase 5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32805: 189179-191400 , PASA_asmbl_32806: 191665-191807
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000031_240 0.0 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
2 Hb_000331_170 0.0691161122 - - PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase At3g03770 [Jatropha curcas]
3 Hb_004007_050 0.0697490671 transcription factor TF Family: GRAS PREDICTED: protein SHORT-ROOT [Jatropha curcas]
4 Hb_001958_040 0.0779296401 - - PREDICTED: uncharacterized protein LOC105641237 [Jatropha curcas]
5 Hb_004453_160 0.0787000921 - - conserved hypothetical protein [Ricinus communis]
6 Hb_011310_170 0.0813456852 transcription factor TF Family: ERF DNA binding protein, putative [Ricinus communis]
7 Hb_005977_080 0.0832083171 transcription factor TF Family: bZIP PREDICTED: transcription factor HY5-like [Jatropha curcas]
8 Hb_023640_020 0.0856021405 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000139_040 0.0859297664 - - spermine synthase, putative [Ricinus communis]
10 Hb_019516_010 0.0873089733 - - PREDICTED: glucan endo-1,3-beta-glucosidase 11-like isoform X2 [Populus euphratica]
11 Hb_004128_150 0.0923276934 - - hypothetical protein POPTR_0016s08360g [Populus trichocarpa]
12 Hb_049846_010 0.0965977872 - - hypothetical protein JCGZ_23781 [Jatropha curcas]
13 Hb_007221_020 0.0985564285 - - FAD-binding domain-containing family protein [Populus trichocarpa]
14 Hb_000397_060 0.1000956781 - - PREDICTED: uncharacterized protein LOC105641237 [Jatropha curcas]
15 Hb_031321_020 0.100555425 - - hypothetical protein POPTR_0003s15520g [Populus trichocarpa]
16 Hb_000073_040 0.1028036077 - - hypothetical protein POPTR_0003s21020g, partial [Populus trichocarpa]
17 Hb_001258_130 0.1029512133 - - PREDICTED: kinesin-like protein KIF19 [Jatropha curcas]
18 Hb_000072_230 0.103870644 - - hypothetical protein POPTR_0004s10790g [Populus trichocarpa]
19 Hb_005276_140 0.1044628169 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000160_190 0.1066331589 - - PREDICTED: heavy metal-associated isoprenylated plant protein 26 [Jatropha curcas]

Gene co-expression network

sample Hb_000031_240 Hb_000031_240 Hb_000331_170 Hb_000331_170 Hb_000031_240--Hb_000331_170 Hb_004007_050 Hb_004007_050 Hb_000031_240--Hb_004007_050 Hb_001958_040 Hb_001958_040 Hb_000031_240--Hb_001958_040 Hb_004453_160 Hb_004453_160 Hb_000031_240--Hb_004453_160 Hb_011310_170 Hb_011310_170 Hb_000031_240--Hb_011310_170 Hb_005977_080 Hb_005977_080 Hb_000031_240--Hb_005977_080 Hb_031321_020 Hb_031321_020 Hb_000331_170--Hb_031321_020 Hb_007221_020 Hb_007221_020 Hb_000331_170--Hb_007221_020 Hb_005276_140 Hb_005276_140 Hb_000331_170--Hb_005276_140 Hb_019516_010 Hb_019516_010 Hb_000331_170--Hb_019516_010 Hb_000331_170--Hb_004453_160 Hb_004128_150 Hb_004128_150 Hb_004007_050--Hb_004128_150 Hb_004007_050--Hb_004453_160 Hb_004007_050--Hb_001958_040 Hb_023640_020 Hb_023640_020 Hb_004007_050--Hb_023640_020 Hb_004007_050--Hb_011310_170 Hb_000073_040 Hb_000073_040 Hb_001958_040--Hb_000073_040 Hb_000397_060 Hb_000397_060 Hb_001958_040--Hb_000397_060 Hb_001301_310 Hb_001301_310 Hb_001958_040--Hb_001301_310 Hb_001958_040--Hb_004128_150 Hb_001958_040--Hb_019516_010 Hb_004453_160--Hb_007221_020 Hb_132840_190 Hb_132840_190 Hb_004453_160--Hb_132840_190 Hb_004453_160--Hb_004128_150 Hb_002307_140 Hb_002307_140 Hb_004453_160--Hb_002307_140 Hb_011310_170--Hb_004128_150 Hb_011310_170--Hb_023640_020 Hb_011310_170--Hb_005977_080 Hb_011310_170--Hb_000331_170 Hb_004137_110 Hb_004137_110 Hb_005977_080--Hb_004137_110 Hb_005977_080--Hb_023640_020 Hb_000160_190 Hb_000160_190 Hb_005977_080--Hb_000160_190 Hb_003207_120 Hb_003207_120 Hb_005977_080--Hb_003207_120 Hb_005977_080--Hb_000331_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.00808888 0.280151 6.3495 3.92701 0 0.0141439
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0433462 0.027524 0.0344349 1.99467

CAGE analysis