Hb_000031_290

Information

Type -
Description -
Location Contig31: 234508-239640
Sequence    

Annotation

kegg
ID pop:POPTR_0006s28540g
description POPTRDRAFT_867192; hypothetical protein
nr
ID XP_002308728.2
description hypothetical protein POPTR_0006s28540g [Populus trichocarpa]
swissprot
ID Q67XW5
description Ubiquitin carboxyl-terminal hydrolase 18 OS=Arabidopsis thaliana GN=UBP18 PE=2 SV=2
trembl
ID B9HBI2
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s28540g PE=4 SV=2
Gene Ontology
ID GO:0036459
description ubiquitin carboxyl-terminal hydrolase 18-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000031_290 0.0 - - hypothetical protein POPTR_0006s28540g [Populus trichocarpa]
2 Hb_000025_650 0.0762332108 - - exosome complex exonuclease rrp45, putative [Ricinus communis]
3 Hb_001085_320 0.0829995705 transcription factor TF Family: LUG WD-repeat protein, putative [Ricinus communis]
4 Hb_002477_130 0.0851871109 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000031_280 0.0868649994 - - -
6 Hb_002749_110 0.0892623015 - - PREDICTED: uncharacterized protein LOC105636001 isoform X1 [Jatropha curcas]
7 Hb_002093_030 0.0905928639 - - PREDICTED: uncharacterized protein LOC105648523 [Jatropha curcas]
8 Hb_003680_230 0.0906282288 transcription factor TF Family: Trihelix PREDICTED: uncharacterized protein LOC105642342 [Jatropha curcas]
9 Hb_006445_010 0.0914389215 - - PREDICTED: uncharacterized protein LOC105640147 [Jatropha curcas]
10 Hb_009151_020 0.0926280462 - - PREDICTED: DNA polymerase delta catalytic subunit [Jatropha curcas]
11 Hb_005892_030 0.0943410258 - - PREDICTED: splicing factor U2af large subunit A [Jatropha curcas]
12 Hb_030131_040 0.0947553619 - - ribosome biogenesis protein tsr1, putative [Ricinus communis]
13 Hb_000809_210 0.0960136344 - - PREDICTED: CDPK-related kinase 5 [Jatropha curcas]
14 Hb_001195_560 0.0960976398 - - PREDICTED: lysophospholipid acyltransferase LPEAT1 isoform X1 [Jatropha curcas]
15 Hb_002681_170 0.0969829956 - - PREDICTED: probable methyltransferase PMT9 [Jatropha curcas]
16 Hb_000002_490 0.0978752565 - - PREDICTED: uncharacterized protein LOC105632095 [Jatropha curcas]
17 Hb_001771_120 0.0980592411 - - K+ transport growth defect-like protein [Hevea brasiliensis]
18 Hb_007558_120 0.0981042571 transcription factor TF Family: IWS1 transcription elongation factor s-II, putative [Ricinus communis]
19 Hb_000866_470 0.0997894073 - - PREDICTED: uncharacterized protein LOC105643015 [Jatropha curcas]
20 Hb_007426_150 0.1001651892 - - PREDICTED: F-box protein At5g46170-like [Jatropha curcas]

Gene co-expression network

sample Hb_000031_290 Hb_000031_290 Hb_000025_650 Hb_000025_650 Hb_000031_290--Hb_000025_650 Hb_001085_320 Hb_001085_320 Hb_000031_290--Hb_001085_320 Hb_002477_130 Hb_002477_130 Hb_000031_290--Hb_002477_130 Hb_000031_280 Hb_000031_280 Hb_000031_290--Hb_000031_280 Hb_002749_110 Hb_002749_110 Hb_000031_290--Hb_002749_110 Hb_002093_030 Hb_002093_030 Hb_000031_290--Hb_002093_030 Hb_000935_090 Hb_000935_090 Hb_000025_650--Hb_000935_090 Hb_000347_570 Hb_000347_570 Hb_000025_650--Hb_000347_570 Hb_001178_150 Hb_001178_150 Hb_000025_650--Hb_001178_150 Hb_017895_020 Hb_017895_020 Hb_000025_650--Hb_017895_020 Hb_004429_160 Hb_004429_160 Hb_000025_650--Hb_004429_160 Hb_030131_040 Hb_030131_040 Hb_001085_320--Hb_030131_040 Hb_000868_060 Hb_000868_060 Hb_001085_320--Hb_000868_060 Hb_000059_140 Hb_000059_140 Hb_001085_320--Hb_000059_140 Hb_015763_030 Hb_015763_030 Hb_001085_320--Hb_015763_030 Hb_007558_120 Hb_007558_120 Hb_001085_320--Hb_007558_120 Hb_001454_320 Hb_001454_320 Hb_001085_320--Hb_001454_320 Hb_000365_140 Hb_000365_140 Hb_002477_130--Hb_000365_140 Hb_000424_010 Hb_000424_010 Hb_002477_130--Hb_000424_010 Hb_005895_040 Hb_005895_040 Hb_002477_130--Hb_005895_040 Hb_000640_220 Hb_000640_220 Hb_002477_130--Hb_000640_220 Hb_000358_250 Hb_000358_250 Hb_002477_130--Hb_000358_250 Hb_001771_120 Hb_001771_120 Hb_002477_130--Hb_001771_120 Hb_008556_030 Hb_008556_030 Hb_000031_280--Hb_008556_030 Hb_001163_120 Hb_001163_120 Hb_000031_280--Hb_001163_120 Hb_000599_080 Hb_000599_080 Hb_000031_280--Hb_000599_080 Hb_002681_170 Hb_002681_170 Hb_000031_280--Hb_002681_170 Hb_001418_040 Hb_001418_040 Hb_000031_280--Hb_001418_040 Hb_000152_260 Hb_000152_260 Hb_002749_110--Hb_000152_260 Hb_002749_110--Hb_002093_030 Hb_001473_090 Hb_001473_090 Hb_002749_110--Hb_001473_090 Hb_001599_030 Hb_001599_030 Hb_002749_110--Hb_001599_030 Hb_000107_400 Hb_000107_400 Hb_002749_110--Hb_000107_400 Hb_003126_100 Hb_003126_100 Hb_002749_110--Hb_003126_100 Hb_002093_030--Hb_003126_100 Hb_022693_030 Hb_022693_030 Hb_002093_030--Hb_022693_030 Hb_002093_030--Hb_000152_260 Hb_002093_030--Hb_008556_030 Hb_001828_160 Hb_001828_160 Hb_002093_030--Hb_001828_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.04331 4.56454 4.3284 4.15897 9.01483 7.41976
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.3498 2.48364 1.70397 1.98566 3.67839

CAGE analysis