Hb_000031_330

Information

Type transcription factor
Description TF Family: Orphans
Location Contig31: 264339-265240
Sequence    

Annotation

kegg
ID pop:POPTR_0157s00200g
description hypothetical protein
nr
ID XP_006388555.1
description hypothetical protein POPTR_0157s00200g, partial [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID U7DZ16
description Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0157s00200g PE=4 SV=1
Gene Ontology
ID GO:0000160
description histidine kinase 5-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000031_330 0.0 transcription factor TF Family: Orphans hypothetical protein POPTR_0157s00200g, partial [Populus trichocarpa]
2 Hb_007382_090 0.1953295501 - - protein binding protein, putative [Ricinus communis]
3 Hb_001195_210 0.1967571232 - - -
4 Hb_000953_080 0.1984596273 - - PREDICTED: PAN domain-containing protein At5g03700 [Jatropha curcas]
5 Hb_005217_070 0.2007561518 - - conserved hypothetical protein [Ricinus communis]
6 Hb_003740_030 0.2170147528 transcription factor TF Family: RAV DNA-binding protein RAV1, putative [Ricinus communis]
7 Hb_000116_200 0.2282925662 transcription factor TF Family: HMG hypothetical protein POPTR_0005s10440g [Populus trichocarpa]
8 Hb_000112_100 0.240999458 - - glutamate receptor 2 plant, putative [Ricinus communis]
9 Hb_003376_370 0.2481700801 - - protein binding protein, putative [Ricinus communis]
10 Hb_011099_010 0.2481871679 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
11 Hb_008971_030 0.2518325142 - - conserved hypothetical protein [Ricinus communis]
12 Hb_185830_090 0.2535497835 - - conserved hypothetical protein [Ricinus communis]
13 Hb_015934_100 0.2538945487 - - phospholipid/glycerol acyltransferase family protein [Populus trichocarpa]
14 Hb_000163_040 0.2551119623 - - PREDICTED: indole-3-acetic acid-induced protein ARG2-like [Jatropha curcas]
15 Hb_146901_020 0.2586720441 - - -
16 Hb_002289_140 0.2587898845 - - conserved hypothetical protein [Ricinus communis]
17 Hb_096878_010 0.2588810008 - - hypothetical protein POPTR_0112s002001g, partial [Populus trichocarpa]
18 Hb_154600_010 0.2600728894 - - hypothetical protein JCGZ_17786 [Jatropha curcas]
19 Hb_000031_300 0.2602146113 - - PREDICTED: histidine kinase 5 [Jatropha curcas]
20 Hb_133508_020 0.2618074127 - - PREDICTED: L-ascorbate oxidase homolog [Jatropha curcas]

Gene co-expression network

sample Hb_000031_330 Hb_000031_330 Hb_007382_090 Hb_007382_090 Hb_000031_330--Hb_007382_090 Hb_001195_210 Hb_001195_210 Hb_000031_330--Hb_001195_210 Hb_000953_080 Hb_000953_080 Hb_000031_330--Hb_000953_080 Hb_005217_070 Hb_005217_070 Hb_000031_330--Hb_005217_070 Hb_003740_030 Hb_003740_030 Hb_000031_330--Hb_003740_030 Hb_000116_200 Hb_000116_200 Hb_000031_330--Hb_000116_200 Hb_005332_130 Hb_005332_130 Hb_007382_090--Hb_005332_130 Hb_007382_090--Hb_003740_030 Hb_000111_440 Hb_000111_440 Hb_007382_090--Hb_000111_440 Hb_003119_040 Hb_003119_040 Hb_007382_090--Hb_003119_040 Hb_007382_090--Hb_005217_070 Hb_005672_030 Hb_005672_030 Hb_001195_210--Hb_005672_030 Hb_015934_100 Hb_015934_100 Hb_001195_210--Hb_015934_100 Hb_000853_010 Hb_000853_010 Hb_001195_210--Hb_000853_010 Hb_000007_070 Hb_000007_070 Hb_001195_210--Hb_000007_070 Hb_146901_020 Hb_146901_020 Hb_001195_210--Hb_146901_020 Hb_001416_170 Hb_001416_170 Hb_001195_210--Hb_001416_170 Hb_000112_100 Hb_000112_100 Hb_000953_080--Hb_000112_100 Hb_001456_050 Hb_001456_050 Hb_000953_080--Hb_001456_050 Hb_055147_020 Hb_055147_020 Hb_000953_080--Hb_055147_020 Hb_010598_010 Hb_010598_010 Hb_000953_080--Hb_010598_010 Hb_000953_080--Hb_001195_210 Hb_014549_010 Hb_014549_010 Hb_005217_070--Hb_014549_010 Hb_011826_010 Hb_011826_010 Hb_005217_070--Hb_011826_010 Hb_036602_010 Hb_036602_010 Hb_005217_070--Hb_036602_010 Hb_006721_060 Hb_006721_060 Hb_005217_070--Hb_006721_060 Hb_000163_040 Hb_000163_040 Hb_005217_070--Hb_000163_040 Hb_003489_010 Hb_003489_010 Hb_005217_070--Hb_003489_010 Hb_000866_100 Hb_000866_100 Hb_003740_030--Hb_000866_100 Hb_001390_040 Hb_001390_040 Hb_003740_030--Hb_001390_040 Hb_007474_020 Hb_007474_020 Hb_003740_030--Hb_007474_020 Hb_034498_010 Hb_034498_010 Hb_003740_030--Hb_034498_010 Hb_000034_150 Hb_000034_150 Hb_003740_030--Hb_000034_150 Hb_000116_200--Hb_001195_210 Hb_003376_370 Hb_003376_370 Hb_000116_200--Hb_003376_370 Hb_154600_010 Hb_154600_010 Hb_000116_200--Hb_154600_010 Hb_001754_160 Hb_001754_160 Hb_000116_200--Hb_001754_160 Hb_003643_030 Hb_003643_030 Hb_000116_200--Hb_003643_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.340297 1.24453 1.59489 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.468418 0 0.424326 0

CAGE analysis