Hb_000032_010

Information

Type -
Description -
Location Contig32: 7751-13031
Sequence    

Annotation

kegg
ID rcu:RCOM_1691080
description crooked neck protein, putative
nr
ID XP_002509927.1
description crooked neck protein, putative [Ricinus communis]
swissprot
ID P63155
description Crooked neck-like protein 1 OS=Rattus norvegicus GN=Crnkl1 PE=2 SV=1
trembl
ID B9RCP3
description Crooked neck protein, putative OS=Ricinus communis GN=RCOM_1691080 PE=4 SV=1
Gene Ontology
ID GO:0005622
description crooked neck-like protein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33677: 7784-12968
cDNA
(Sanger)
(ID:Location)		 018_J09.ab1: 8596-10886

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000032_010 0.0 - - crooked neck protein, putative [Ricinus communis]
2 Hb_019153_020 0.0488591725 - - PREDICTED: KH domain-containing protein At4g18375 isoform X2 [Jatropha curcas]
3 Hb_003040_020 0.051794267 - - PREDICTED: protein cereblon [Jatropha curcas]
4 Hb_004429_160 0.0576556382 - - PREDICTED: serine/threonine-protein kinase TAO3 isoform X1 [Jatropha curcas]
5 Hb_000753_100 0.0582154552 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105640677 isoform X1 [Jatropha curcas]
6 Hb_000191_130 0.0604170895 - - PREDICTED: RNA polymerase-associated protein CTR9 homolog [Jatropha curcas]
7 Hb_000856_140 0.0622955796 - - PREDICTED: uncharacterized protein LOC105640478 isoform X1 [Jatropha curcas]
8 Hb_005539_190 0.0673188713 - - PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp31 [Jatropha curcas]
9 Hb_140049_020 0.0688528656 - - PREDICTED: cell division cycle protein 73 [Jatropha curcas]
10 Hb_004659_080 0.0706902609 - - PREDICTED: SWI/SNF complex subunit SWI3D isoform X1 [Jatropha curcas]
11 Hb_003777_160 0.0724180065 transcription factor TF Family: bZIP PREDICTED: G-box-binding factor 4 isoform X1 [Jatropha curcas]
12 Hb_004480_040 0.0727651639 - - PREDICTED: DDB1- and CUL4-associated factor homolog 1 isoform X2 [Jatropha curcas]
13 Hb_004635_050 0.0735705756 - - nucleolar phosphoprotein, putative [Ricinus communis]
14 Hb_000010_360 0.0740405917 - - PREDICTED: probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY [Jatropha curcas]
15 Hb_000640_310 0.0744543685 - - hypothetical protein JCGZ_14055 [Jatropha curcas]
16 Hb_000418_140 0.0753425721 - - PREDICTED: DNA damage-binding protein 1a [Jatropha curcas]
17 Hb_000664_070 0.076157735 - - PREDICTED: protein cereblon [Jatropha curcas]
18 Hb_000120_610 0.0765096964 - - mitotic control protein dis3, putative [Ricinus communis]
19 Hb_144831_010 0.0775034015 transcription factor TF Family: MYB transcription factor, putative [Ricinus communis]
20 Hb_000152_340 0.0780684954 - - PREDICTED: probable rRNA-processing protein EBP2 homolog [Jatropha curcas]

Gene co-expression network

sample Hb_000032_010 Hb_000032_010 Hb_019153_020 Hb_019153_020 Hb_000032_010--Hb_019153_020 Hb_003040_020 Hb_003040_020 Hb_000032_010--Hb_003040_020 Hb_004429_160 Hb_004429_160 Hb_000032_010--Hb_004429_160 Hb_000753_100 Hb_000753_100 Hb_000032_010--Hb_000753_100 Hb_000191_130 Hb_000191_130 Hb_000032_010--Hb_000191_130 Hb_000856_140 Hb_000856_140 Hb_000032_010--Hb_000856_140 Hb_140049_020 Hb_140049_020 Hb_019153_020--Hb_140049_020 Hb_000417_160 Hb_000417_160 Hb_019153_020--Hb_000417_160 Hb_002221_050 Hb_002221_050 Hb_019153_020--Hb_002221_050 Hb_000529_260 Hb_000529_260 Hb_019153_020--Hb_000529_260 Hb_010315_090 Hb_010315_090 Hb_019153_020--Hb_010315_090 Hb_003040_020--Hb_004429_160 Hb_005539_190 Hb_005539_190 Hb_003040_020--Hb_005539_190 Hb_003040_020--Hb_000191_130 Hb_003040_020--Hb_019153_020 Hb_003040_020--Hb_000856_140 Hb_004429_160--Hb_000191_130 Hb_001307_080 Hb_001307_080 Hb_004429_160--Hb_001307_080 Hb_000062_470 Hb_000062_470 Hb_004429_160--Hb_000062_470 Hb_000935_090 Hb_000935_090 Hb_004429_160--Hb_000935_090 Hb_003540_160 Hb_003540_160 Hb_000753_100--Hb_003540_160 Hb_000753_100--Hb_003040_020 Hb_001117_190 Hb_001117_190 Hb_000753_100--Hb_001117_190 Hb_000753_100--Hb_140049_020 Hb_005188_060 Hb_005188_060 Hb_000753_100--Hb_005188_060 Hb_000191_130--Hb_000062_470 Hb_000917_160 Hb_000917_160 Hb_000191_130--Hb_000917_160 Hb_000010_360 Hb_000010_360 Hb_000191_130--Hb_000010_360 Hb_000640_310 Hb_000640_310 Hb_000191_130--Hb_000640_310 Hb_000856_140--Hb_019153_020 Hb_000856_140--Hb_004429_160 Hb_148909_030 Hb_148909_030 Hb_000856_140--Hb_148909_030 Hb_004627_060 Hb_004627_060 Hb_000856_140--Hb_004627_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
44.4087 52.73 23.8082 16.3857 54.7412 36.6947
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
20.2025 14.0169 18.56 30.4682 20.9029

CAGE analysis