Hb_000032_060

Information

Type -
Description -
Location Contig32: 48966-53779
Sequence    

Annotation

kegg
ID rcu:RCOM_1691140
description hypothetical protein
nr
ID XP_002509932.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9FHK4
description Uncharacterized protein At5g05190 OS=Arabidopsis thaliana GN=Y-1 PE=1 SV=1
trembl
ID B9RCP8
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1691140 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33689: 49038-49905 , PASA_asmbl_33690: 49906-50598 , PASA_asmbl_33692: 52198-53826 , PASA_asmbl_33693: 52296-52738
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000032_060 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_006788_160 0.1519641596 - - hypothetical protein POPTR_0002s04680g [Populus trichocarpa]
3 Hb_000218_010 0.1526010293 - - -
4 Hb_010642_030 0.1526885365 - - zinc phosphodiesterase, putative [Ricinus communis]
5 Hb_003849_250 0.1556313562 - - PREDICTED: protein MAK16 homolog [Jatropha curcas]
6 Hb_000753_200 0.156382423 - - PREDICTED: putative ATP-dependent helicase hrq1 [Jatropha curcas]
7 Hb_000866_470 0.1600028362 - - PREDICTED: uncharacterized protein LOC105643015 [Jatropha curcas]
8 Hb_027472_050 0.1618877414 transcription factor TF Family: NF-YC PREDICTED: nuclear transcription factor Y subunit C-2 [Jatropha curcas]
9 Hb_000334_270 0.1636002054 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X1 [Jatropha curcas]
10 Hb_008518_050 0.1643866722 - - hypothetical protein F383_31148 [Gossypium arboreum]
11 Hb_000926_190 0.1648306868 - - PREDICTED: 1,4-alpha-glucan-branching enzyme 3, chloroplastic/amyloplastic isoform X2 [Jatropha curcas]
12 Hb_002864_010 0.1652566252 - - PREDICTED: regulator of nonsense transcripts 1 homolog [Jatropha curcas]
13 Hb_000261_110 0.165288142 - - PREDICTED: probable methionine--tRNA ligase [Jatropha curcas]
14 Hb_004970_090 0.1657723395 - - PREDICTED: probable BOI-related E3 ubiquitin-protein ligase 2 [Jatropha curcas]
15 Hb_002374_280 0.1664633035 - - -
16 Hb_001277_230 0.1670681654 - - -
17 Hb_177132_010 0.1672558394 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
18 Hb_033153_070 0.1673316213 - - PREDICTED: uncharacterized protein LOC105649606 isoform X1 [Jatropha curcas]
19 Hb_027760_080 0.1680124436 - - cytochrome P450, putative [Ricinus communis]
20 Hb_001638_160 0.1680433579 - - PREDICTED: uncharacterized protein LOC105642785 [Jatropha curcas]

Gene co-expression network

sample Hb_000032_060 Hb_000032_060 Hb_006788_160 Hb_006788_160 Hb_000032_060--Hb_006788_160 Hb_000218_010 Hb_000218_010 Hb_000032_060--Hb_000218_010 Hb_010642_030 Hb_010642_030 Hb_000032_060--Hb_010642_030 Hb_003849_250 Hb_003849_250 Hb_000032_060--Hb_003849_250 Hb_000753_200 Hb_000753_200 Hb_000032_060--Hb_000753_200 Hb_000866_470 Hb_000866_470 Hb_000032_060--Hb_000866_470 Hb_000345_170 Hb_000345_170 Hb_006788_160--Hb_000345_170 Hb_154745_010 Hb_154745_010 Hb_006788_160--Hb_154745_010 Hb_000977_210 Hb_000977_210 Hb_006788_160--Hb_000977_210 Hb_002527_030 Hb_002527_030 Hb_006788_160--Hb_002527_030 Hb_006788_160--Hb_010642_030 Hb_000367_130 Hb_000367_130 Hb_006788_160--Hb_000367_130 Hb_033095_020 Hb_033095_020 Hb_000218_010--Hb_033095_020 Hb_001638_160 Hb_001638_160 Hb_000218_010--Hb_001638_160 Hb_002745_010 Hb_002745_010 Hb_000218_010--Hb_002745_010 Hb_004970_090 Hb_004970_090 Hb_000218_010--Hb_004970_090 Hb_017491_030 Hb_017491_030 Hb_000218_010--Hb_017491_030 Hb_054865_090 Hb_054865_090 Hb_000218_010--Hb_054865_090 Hb_000364_080 Hb_000364_080 Hb_010642_030--Hb_000364_080 Hb_002784_060 Hb_002784_060 Hb_010642_030--Hb_002784_060 Hb_000523_090 Hb_000523_090 Hb_010642_030--Hb_000523_090 Hb_000627_030 Hb_000627_030 Hb_010642_030--Hb_000627_030 Hb_002067_020 Hb_002067_020 Hb_010642_030--Hb_002067_020 Hb_002942_160 Hb_002942_160 Hb_010642_030--Hb_002942_160 Hb_008406_110 Hb_008406_110 Hb_003849_250--Hb_008406_110 Hb_000116_180 Hb_000116_180 Hb_003849_250--Hb_000116_180 Hb_000334_270 Hb_000334_270 Hb_003849_250--Hb_000334_270 Hb_003849_250--Hb_000866_470 Hb_000358_250 Hb_000358_250 Hb_003849_250--Hb_000358_250 Hb_001828_160 Hb_001828_160 Hb_003849_250--Hb_001828_160 Hb_000265_230 Hb_000265_230 Hb_000753_200--Hb_000265_230 Hb_035755_010 Hb_035755_010 Hb_000753_200--Hb_035755_010 Hb_006816_430 Hb_006816_430 Hb_000753_200--Hb_006816_430 Hb_000920_060 Hb_000920_060 Hb_000753_200--Hb_000920_060 Hb_000160_210 Hb_000160_210 Hb_000753_200--Hb_000160_210 Hb_001123_260 Hb_001123_260 Hb_000753_200--Hb_001123_260 Hb_000866_470--Hb_000116_180 Hb_000913_050 Hb_000913_050 Hb_000866_470--Hb_000913_050 Hb_030131_040 Hb_030131_040 Hb_000866_470--Hb_030131_040 Hb_000085_150 Hb_000085_150 Hb_000866_470--Hb_000085_150 Hb_001300_070 Hb_001300_070 Hb_000866_470--Hb_001300_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.2384 14.573 6.07235 3.28357 13.2367 16.522
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.4958 11.8394 0.893736 5.12515 10.7221

CAGE analysis