Hb_000032_240

Information

Type -
Description -
Location Contig32: 210577-213170
Sequence    

Annotation

kegg
ID rcu:RCOM_1691850
description hypothetical protein
nr
ID XP_002509953.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RCR9
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1691850 PE=4 SV=1
Gene Ontology
ID GO:0012505
description histone-lysine n-methyltransferase 1 isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33708: 212703-213030
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000032_240 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_002603_130 0.1578352063 - - PREDICTED: cytochrome P450 90A1 [Jatropha curcas]
3 Hb_124315_040 0.1704951072 - - hypothetical protein 19 [Hevea brasiliensis]
4 Hb_002876_030 0.1766751398 - - PREDICTED: 3-ketoacyl-CoA synthase 4 [Jatropha curcas]
5 Hb_005396_040 0.1820336046 - - ABC transporter family protein [Hevea brasiliensis]
6 Hb_000373_290 0.1898518418 - - RecName: Full=Citrate-binding protein; Flags: Precursor [Hevea brasiliensis]
7 Hb_000548_030 0.1956936076 rubber biosynthesis Gene Name: CPT5 PREDICTED: dehydrodolichyl diphosphate synthase 6-like [Beta vulgaris subsp. vulgaris]
8 Hb_000139_330 0.1994544302 - - short chain dehydrogenase, putative [Ricinus communis]
9 Hb_007044_210 0.1997566473 transcription factor TF Family: MYB PREDICTED: protein rough sheath 2 homolog [Populus euphratica]
10 Hb_023214_010 0.2023277041 - - aberrant lateral root formation 1 family protein [Populus trichocarpa]
11 Hb_001631_080 0.2040833322 - - PREDICTED: importin-5-like [Populus euphratica]
12 Hb_074197_010 0.2041125457 - - PREDICTED: methylsterol monooxygenase 1-1-like [Jatropha curcas]
13 Hb_002471_070 0.2105280433 - - Tartrate-resistant acid phosphatase type 5 precursor, putative [Ricinus communis]
14 Hb_009805_010 0.2121548169 - - transcription factor, putative [Ricinus communis]
15 Hb_001109_120 0.212743637 - - PREDICTED: acyl-CoA-binding protein-like [Nelumbo nucifera]
16 Hb_101334_010 0.2127784072 - - PREDICTED: protein TIFY 4B isoform X3 [Jatropha curcas]
17 Hb_004787_090 0.2167623013 - - PREDICTED: HVA22-like protein a [Jatropha curcas]
18 Hb_000481_020 0.217971542 - - PREDICTED: shikimate kinase 1, chloroplastic [Jatropha curcas]
19 Hb_027380_040 0.2223643427 - - hypothetical protein B456_011G046500, partial [Gossypium raimondii]
20 Hb_006120_200 0.2224038329 - - PREDICTED: uncharacterized protein LOC103333282 [Prunus mume]

Gene co-expression network

sample Hb_000032_240 Hb_000032_240 Hb_002603_130 Hb_002603_130 Hb_000032_240--Hb_002603_130 Hb_124315_040 Hb_124315_040 Hb_000032_240--Hb_124315_040 Hb_002876_030 Hb_002876_030 Hb_000032_240--Hb_002876_030 Hb_005396_040 Hb_005396_040 Hb_000032_240--Hb_005396_040 Hb_000373_290 Hb_000373_290 Hb_000032_240--Hb_000373_290 Hb_000548_030 Hb_000548_030 Hb_000032_240--Hb_000548_030 Hb_006501_110 Hb_006501_110 Hb_002603_130--Hb_006501_110 Hb_000982_070 Hb_000982_070 Hb_002603_130--Hb_000982_070 Hb_074197_010 Hb_074197_010 Hb_002603_130--Hb_074197_010 Hb_000207_380 Hb_000207_380 Hb_002603_130--Hb_000207_380 Hb_000139_330 Hb_000139_330 Hb_002603_130--Hb_000139_330 Hb_012347_010 Hb_012347_010 Hb_124315_040--Hb_012347_010 Hb_000957_040 Hb_000957_040 Hb_124315_040--Hb_000957_040 Hb_003540_230 Hb_003540_230 Hb_124315_040--Hb_003540_230 Hb_010872_060 Hb_010872_060 Hb_124315_040--Hb_010872_060 Hb_124315_040--Hb_005396_040 Hb_029584_140 Hb_029584_140 Hb_124315_040--Hb_029584_140 Hb_002876_030--Hb_005396_040 Hb_002471_070 Hb_002471_070 Hb_002876_030--Hb_002471_070 Hb_006070_010 Hb_006070_010 Hb_002876_030--Hb_006070_010 Hb_003207_110 Hb_003207_110 Hb_002876_030--Hb_003207_110 Hb_002876_030--Hb_000139_330 Hb_002876_030--Hb_124315_040 Hb_023214_010 Hb_023214_010 Hb_005396_040--Hb_023214_010 Hb_005396_040--Hb_003207_110 Hb_005396_040--Hb_002471_070 Hb_005396_040--Hb_012347_010 Hb_000920_140 Hb_000920_140 Hb_000373_290--Hb_000920_140 Hb_001195_580 Hb_001195_580 Hb_000373_290--Hb_001195_580 Hb_023988_020 Hb_023988_020 Hb_000373_290--Hb_023988_020 Hb_000641_030 Hb_000641_030 Hb_000373_290--Hb_000641_030 Hb_005271_170 Hb_005271_170 Hb_000373_290--Hb_005271_170 Hb_019516_040 Hb_019516_040 Hb_000373_290--Hb_019516_040 Hb_003304_050 Hb_003304_050 Hb_000548_030--Hb_003304_050 Hb_000548_030--Hb_000641_030 Hb_100414_010 Hb_100414_010 Hb_000548_030--Hb_100414_010 Hb_000548_030--Hb_000139_330 Hb_000959_360 Hb_000959_360 Hb_000548_030--Hb_000959_360 Hb_003654_010 Hb_003654_010 Hb_000548_030--Hb_003654_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.06969 0 0.0625042 0.768094 0.381212 0.648787
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.52722 0.835564 0.376763 0.0460983 0.0599011

CAGE analysis