Hb_000032_270

Information

Type -
Description -
Location Contig32: 229103-240256
Sequence    

Annotation

kegg
ID rcu:RCOM_1691880
description protein binding protein, putative
nr
ID XP_012086727.1
description PREDICTED: F-box/LRR-repeat protein 13 [Jatropha curcas]
swissprot
ID Q8NEE6
description F-box/LRR-repeat protein 13 OS=Homo sapiens GN=FBXL13 PE=2 SV=3
trembl
ID A0A067JN57
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20458 PE=4 SV=1
Gene Ontology
ID GO:0003824
description protein binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33711: 237234-238630 , PASA_asmbl_33712: 238646-240141
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000032_270 0.0 - - PREDICTED: F-box/LRR-repeat protein 13 [Jatropha curcas]
2 Hb_000680_160 0.0637127046 - - PREDICTED: protein FLX-like 3 [Jatropha curcas]
3 Hb_003428_030 0.0641056726 - - tRNA, putative [Ricinus communis]
4 Hb_003057_100 0.0643318581 - - PREDICTED: LOW QUALITY PROTEIN: S-adenosylmethionine mitochondrial carrier protein-like [Malus domestica]
5 Hb_005846_040 0.0678071864 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 4 [Populus euphratica]
6 Hb_001758_100 0.0702640857 - - basic helix-loop-helix-containing protein, putative [Ricinus communis]
7 Hb_007691_030 0.0702645553 desease resistance Gene Name: AAA PREDICTED: ATPase family AAA domain-containing protein 1-B [Jatropha curcas]
8 Hb_000796_210 0.0755026697 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000096_070 0.07583629 - - PREDICTED: ruvB-like 2 [Jatropha curcas]
10 Hb_000373_070 0.0765308153 - - PREDICTED: serine/threonine-protein kinase HT1-like isoform X2 [Jatropha curcas]
11 Hb_000563_320 0.0766131281 - - PREDICTED: induced during hyphae development protein 1 [Jatropha curcas]
12 Hb_000417_040 0.0772331134 - - PREDICTED: 2-aminoethanethiol dioxygenase-like [Jatropha curcas]
13 Hb_005779_060 0.0777048027 - - PREDICTED: uncharacterized protein LOC105643212 isoform X2 [Jatropha curcas]
14 Hb_003125_200 0.0786603608 - - PREDICTED: mediator of RNA polymerase II transcription subunit 30 [Jatropha curcas]
15 Hb_003761_010 0.0791808146 - - alcohol dehydrogenase, putative [Ricinus communis]
16 Hb_000099_080 0.080628637 - - kinesin light chain, putative [Ricinus communis]
17 Hb_000038_170 0.0809565931 - - PREDICTED: SCY1-like protein 2 [Jatropha curcas]
18 Hb_000016_250 0.0816113279 - - unnamed protein product [Malassezia sympodialis ATCC 42132]
19 Hb_005725_250 0.0818278066 - - PREDICTED: uncharacterized protein LOC105630805 isoform X1 [Jatropha curcas]
20 Hb_024071_020 0.0822488222 - - PREDICTED: uncharacterized protein LOC105639166 [Jatropha curcas]

Gene co-expression network

sample Hb_000032_270 Hb_000032_270 Hb_000680_160 Hb_000680_160 Hb_000032_270--Hb_000680_160 Hb_003428_030 Hb_003428_030 Hb_000032_270--Hb_003428_030 Hb_003057_100 Hb_003057_100 Hb_000032_270--Hb_003057_100 Hb_005846_040 Hb_005846_040 Hb_000032_270--Hb_005846_040 Hb_001758_100 Hb_001758_100 Hb_000032_270--Hb_001758_100 Hb_007691_030 Hb_007691_030 Hb_000032_270--Hb_007691_030 Hb_002078_350 Hb_002078_350 Hb_000680_160--Hb_002078_350 Hb_000680_160--Hb_003428_030 Hb_003525_010 Hb_003525_010 Hb_000680_160--Hb_003525_010 Hb_001579_220 Hb_001579_220 Hb_000680_160--Hb_001579_220 Hb_005188_080 Hb_005188_080 Hb_000680_160--Hb_005188_080 Hb_003428_030--Hb_007691_030 Hb_003428_030--Hb_003525_010 Hb_000093_160 Hb_000093_160 Hb_003428_030--Hb_000093_160 Hb_000038_170 Hb_000038_170 Hb_003428_030--Hb_000038_170 Hb_003125_120 Hb_003125_120 Hb_003428_030--Hb_003125_120 Hb_032202_190 Hb_032202_190 Hb_003057_100--Hb_032202_190 Hb_029866_090 Hb_029866_090 Hb_003057_100--Hb_029866_090 Hb_005305_080 Hb_005305_080 Hb_003057_100--Hb_005305_080 Hb_000510_130 Hb_000510_130 Hb_003057_100--Hb_000510_130 Hb_000059_330 Hb_000059_330 Hb_003057_100--Hb_000059_330 Hb_003151_040 Hb_003151_040 Hb_005846_040--Hb_003151_040 Hb_000373_070 Hb_000373_070 Hb_005846_040--Hb_000373_070 Hb_000030_030 Hb_000030_030 Hb_005846_040--Hb_000030_030 Hb_001245_100 Hb_001245_100 Hb_005846_040--Hb_001245_100 Hb_003787_010 Hb_003787_010 Hb_005846_040--Hb_003787_010 Hb_004116_190 Hb_004116_190 Hb_005846_040--Hb_004116_190 Hb_000120_470 Hb_000120_470 Hb_001758_100--Hb_000120_470 Hb_000504_140 Hb_000504_140 Hb_001758_100--Hb_000504_140 Hb_008900_010 Hb_008900_010 Hb_001758_100--Hb_008900_010 Hb_000465_460 Hb_000465_460 Hb_001758_100--Hb_000465_460 Hb_000317_240 Hb_000317_240 Hb_001758_100--Hb_000317_240 Hb_000757_060 Hb_000757_060 Hb_001758_100--Hb_000757_060 Hb_005144_160 Hb_005144_160 Hb_007691_030--Hb_005144_160 Hb_002739_100 Hb_002739_100 Hb_007691_030--Hb_002739_100 Hb_000876_070 Hb_000876_070 Hb_007691_030--Hb_000876_070 Hb_003092_040 Hb_003092_040 Hb_007691_030--Hb_003092_040 Hb_000580_180 Hb_000580_180 Hb_007691_030--Hb_000580_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.96201 6.14644 4.04572 4.88709 6.50762 6.09257
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.6731 9.05059 6.03655 4.96655 3.16595

CAGE analysis