Hb_000032_290

Information

Type transcription factor
Description TF Family: RWP-RK
Location Contig32: 258875-263243
Sequence    

Annotation

kegg
ID rcu:RCOM_1312240
description transcription factor, putative
nr
ID XP_012086674.1
description PREDICTED: protein NLP7-like [Jatropha curcas]
swissprot
ID Q8RWY4
description Protein NLP6 OS=Arabidopsis thaliana GN=NLP6 PE=2 SV=2
trembl
ID A0A067JMR7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20417 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33718: 260535-260685
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000032_290 0.0 transcription factor TF Family: RWP-RK PREDICTED: protein NLP7-like [Jatropha curcas]
2 Hb_000245_130 0.0592615043 - - PREDICTED: nuclear pore complex protein NUP35 [Jatropha curcas]
3 Hb_000406_220 0.0682879473 - - hypothetical protein POPTR_0005s04700g [Populus trichocarpa]
4 Hb_018838_030 0.0696954531 - - conserved hypothetical protein [Ricinus communis]
5 Hb_181235_010 0.0705924202 transcription factor TF Family: NAC PREDICTED: uncharacterized protein LOC105645554 isoform X2 [Jatropha curcas]
6 Hb_000554_020 0.0749715827 - - PREDICTED: pentatricopeptide repeat-containing protein At2g02980-like [Jatropha curcas]
7 Hb_006332_020 0.075024709 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g10290 [Jatropha curcas]
8 Hb_002636_160 0.0792055948 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g13630 [Jatropha curcas]
9 Hb_015292_030 0.0796121603 - - PREDICTED: pentatricopeptide repeat-containing protein At3g02490, mitochondrial [Jatropha curcas]
10 Hb_033642_010 0.082921118 - - PREDICTED: protection of telomeres protein 1a-like isoform X2 [Jatropha curcas]
11 Hb_001488_330 0.0830426805 - - PREDICTED: transcription initiation factor TFIID subunit 8 [Jatropha curcas]
12 Hb_000923_020 0.0836254135 - - PREDICTED: ankyrin repeat domain-containing protein 65-like [Jatropha curcas]
13 Hb_001226_160 0.0845419808 - - PREDICTED: U2 small nuclear ribonucleoprotein B''-like isoform X1 [Jatropha curcas]
14 Hb_001019_230 0.0848213348 - - PREDICTED: pentatricopeptide repeat-containing protein At1g08070 [Jatropha curcas]
15 Hb_001789_090 0.085010146 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105648450 [Jatropha curcas]
16 Hb_004128_060 0.0851824617 - - PREDICTED: DNA topoisomerase 6 subunit A [Jatropha curcas]
17 Hb_005357_030 0.0852656263 - - PREDICTED: pyruvate, phosphate dikinase regulatory protein 1, chloroplastic [Jatropha curcas]
18 Hb_001571_040 0.0857269975 - - PREDICTED: uncharacterized protein LOC105643972 [Jatropha curcas]
19 Hb_002477_030 0.0863855667 transcription factor TF Family: MYB-related PREDICTED: uncharacterized protein LOC105631404 isoform X1 [Jatropha curcas]
20 Hb_012634_010 0.0874336903 - - PREDICTED: uncharacterized protein LOC105110292 [Populus euphratica]

Gene co-expression network

sample Hb_000032_290 Hb_000032_290 Hb_000245_130 Hb_000245_130 Hb_000032_290--Hb_000245_130 Hb_000406_220 Hb_000406_220 Hb_000032_290--Hb_000406_220 Hb_018838_030 Hb_018838_030 Hb_000032_290--Hb_018838_030 Hb_181235_010 Hb_181235_010 Hb_000032_290--Hb_181235_010 Hb_000554_020 Hb_000554_020 Hb_000032_290--Hb_000554_020 Hb_006332_020 Hb_006332_020 Hb_000032_290--Hb_006332_020 Hb_004128_190 Hb_004128_190 Hb_000245_130--Hb_004128_190 Hb_003847_080 Hb_003847_080 Hb_000245_130--Hb_003847_080 Hb_005333_070 Hb_005333_070 Hb_000245_130--Hb_005333_070 Hb_002374_160 Hb_002374_160 Hb_000245_130--Hb_002374_160 Hb_002078_150 Hb_002078_150 Hb_000245_130--Hb_002078_150 Hb_000406_220--Hb_000554_020 Hb_000406_220--Hb_181235_010 Hb_001789_090 Hb_001789_090 Hb_000406_220--Hb_001789_090 Hb_011161_010 Hb_011161_010 Hb_000406_220--Hb_011161_010 Hb_002810_020 Hb_002810_020 Hb_000406_220--Hb_002810_020 Hb_000210_180 Hb_000210_180 Hb_018838_030--Hb_000210_180 Hb_015292_030 Hb_015292_030 Hb_018838_030--Hb_015292_030 Hb_000085_050 Hb_000085_050 Hb_018838_030--Hb_000085_050 Hb_063090_010 Hb_063090_010 Hb_018838_030--Hb_063090_010 Hb_007441_200 Hb_007441_200 Hb_018838_030--Hb_007441_200 Hb_002154_030 Hb_002154_030 Hb_181235_010--Hb_002154_030 Hb_002477_030 Hb_002477_030 Hb_181235_010--Hb_002477_030 Hb_003777_330 Hb_003777_330 Hb_181235_010--Hb_003777_330 Hb_000062_240 Hb_000062_240 Hb_181235_010--Hb_000062_240 Hb_000554_020--Hb_006332_020 Hb_000754_060 Hb_000754_060 Hb_000554_020--Hb_000754_060 Hb_001671_020 Hb_001671_020 Hb_000554_020--Hb_001671_020 Hb_028872_140 Hb_028872_140 Hb_000554_020--Hb_028872_140 Hb_000398_180 Hb_000398_180 Hb_006332_020--Hb_000398_180 Hb_004195_160 Hb_004195_160 Hb_006332_020--Hb_004195_160 Hb_006332_020--Hb_028872_140 Hb_001571_040 Hb_001571_040 Hb_006332_020--Hb_001571_040 Hb_001226_160 Hb_001226_160 Hb_006332_020--Hb_001226_160 Hb_002876_110 Hb_002876_110 Hb_006332_020--Hb_002876_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.23714 3.09719 0.781004 1.63886 3.40345 5.62366
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.37832 4.82479 3.66204 2.64585 1.41091

CAGE analysis