Hb_000032_370

Information

Type -
Description -
Location Contig32: 290299-293011
Sequence    

Annotation

kegg
ID cit:102608035
description nucleoside diphosphate kinase III, chloroplastic/mitochondrial-like
nr
ID XP_006476377.1
description PREDICTED: nucleoside diphosphate kinase III, chloroplastic/mitochondrial-like [Citrus sinensis]
swissprot
ID Q8LAH8
description Nucleoside diphosphate kinase IV, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=NDK4 PE=1 SV=2
trembl
ID V4TLN6
description Nucleoside diphosphate kinase OS=Citrus clementina GN=CICLE_v10021969mg PE=3 SV=1
Gene Ontology
ID GO:0004550
description nucleoside diphosphate kinase family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33727: 290289-292979 , PASA_asmbl_33728: 290289-292984
cDNA
(Sanger)
(ID:Location)		 011_D10.ab1: 290289-292709

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000032_370 0.0 - - PREDICTED: nucleoside diphosphate kinase III, chloroplastic/mitochondrial-like [Citrus sinensis]
2 Hb_004317_030 0.0490067593 - - PREDICTED: protein CHROMOSOME TRANSMISSION FIDELITY 7 [Jatropha curcas]
3 Hb_000392_550 0.0860971598 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit 6, chloroplastic isoform X1 [Jatropha curcas]
4 Hb_065525_120 0.090088156 - - dtdp-glucose 4-6-dehydratase, putative [Ricinus communis]
5 Hb_002045_060 0.0926194326 - - PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial [Jatropha curcas]
6 Hb_000510_030 0.0935936192 - - Winged-helix DNA-binding transcription factor family protein [Theobroma cacao]
7 Hb_000428_060 0.0976419219 - - malate dehydrogenase, putative [Ricinus communis]
8 Hb_001369_790 0.1054151765 - - PREDICTED: clp protease-related protein At4g12060, chloroplastic [Jatropha curcas]
9 Hb_002876_020 0.1083795745 - - PREDICTED: maf-like protein DDB_G0281937 isoform X2 [Jatropha curcas]
10 Hb_027298_010 0.108963706 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001892_070 0.110994403 - - PREDICTED: uncharacterized protein LOC105634071 [Jatropha curcas]
12 Hb_000457_290 0.1137563842 - - ATP-dependent Clp protease proteolytic subunit, putative [Ricinus communis]
13 Hb_000394_180 0.1150184516 - - PREDICTED: uncharacterized protein LOC105636995 [Jatropha curcas]
14 Hb_004128_070 0.1157975091 - - PREDICTED: thioredoxin-like protein AAED1, chloroplastic [Jatropha curcas]
15 Hb_000012_110 0.1164784318 - - hypothetical protein CICLE_v10008613mg [Citrus clementina]
16 Hb_007894_050 0.1166596655 - - PREDICTED: reactive Intermediate Deaminase A, chloroplastic [Jatropha curcas]
17 Hb_007192_030 0.118491793 - - PREDICTED: manganese-dependent ADP-ribose/CDP-alcohol diphosphatase [Jatropha curcas]
18 Hb_012244_010 0.1187730903 - - PREDICTED: uncharacterized protein LOC105641034 [Jatropha curcas]
19 Hb_019762_050 0.1191551488 transcription factor TF Family: CSD PREDICTED: glycine-rich protein 2-like [Jatropha curcas]
20 Hb_004257_010 0.1205320994 - - CMP-sialic acid transporter, putative [Ricinus communis]

Gene co-expression network

sample Hb_000032_370 Hb_000032_370 Hb_004317_030 Hb_004317_030 Hb_000032_370--Hb_004317_030 Hb_000392_550 Hb_000392_550 Hb_000032_370--Hb_000392_550 Hb_065525_120 Hb_065525_120 Hb_000032_370--Hb_065525_120 Hb_002045_060 Hb_002045_060 Hb_000032_370--Hb_002045_060 Hb_000510_030 Hb_000510_030 Hb_000032_370--Hb_000510_030 Hb_000428_060 Hb_000428_060 Hb_000032_370--Hb_000428_060 Hb_004317_030--Hb_000510_030 Hb_004317_030--Hb_000392_550 Hb_004317_030--Hb_002045_060 Hb_001369_790 Hb_001369_790 Hb_004317_030--Hb_001369_790 Hb_007894_050 Hb_007894_050 Hb_004317_030--Hb_007894_050 Hb_000392_550--Hb_000510_030 Hb_000392_550--Hb_001369_790 Hb_000035_480 Hb_000035_480 Hb_000392_550--Hb_000035_480 Hb_027298_010 Hb_027298_010 Hb_000392_550--Hb_027298_010 Hb_065525_120--Hb_027298_010 Hb_009780_050 Hb_009780_050 Hb_065525_120--Hb_009780_050 Hb_154038_020 Hb_154038_020 Hb_065525_120--Hb_154038_020 Hb_001671_030 Hb_001671_030 Hb_065525_120--Hb_001671_030 Hb_007441_080 Hb_007441_080 Hb_065525_120--Hb_007441_080 Hb_005276_040 Hb_005276_040 Hb_002045_060--Hb_005276_040 Hb_001892_070 Hb_001892_070 Hb_002045_060--Hb_001892_070 Hb_004123_020 Hb_004123_020 Hb_002045_060--Hb_004123_020 Hb_002045_060--Hb_000428_060 Hb_000510_030--Hb_001369_790 Hb_001711_120 Hb_001711_120 Hb_000510_030--Hb_001711_120 Hb_004440_060 Hb_004440_060 Hb_000510_030--Hb_004440_060 Hb_003106_100 Hb_003106_100 Hb_000428_060--Hb_003106_100 Hb_001123_160 Hb_001123_160 Hb_000428_060--Hb_001123_160 Hb_000428_060--Hb_005276_040 Hb_002876_020 Hb_002876_020 Hb_000428_060--Hb_002876_020 Hb_180343_010 Hb_180343_010 Hb_000428_060--Hb_180343_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.68484 6.59228 33.9154 41.9568 4.50605 5.81473
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
30.1898 44.2734 27.1359 21.8163 48.353

CAGE analysis