Hb_000032_390

Information

Type -
Description -
Location Contig32: 299368-304158
Sequence    

Annotation

kegg
ID rcu:RCOM_1692140
description hypothetical protein
nr
ID XP_012086710.1
description PREDICTED: uncharacterized protein LOC105645663 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K0H5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20445 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33729: 294429-298467 , PASA_asmbl_33731: 297200-298467 , PASA_asmbl_33733: 299444-300711 , PASA_asmbl_33734: 299663-300711 , PASA_asmbl_33735: 300712-302067 , PASA_asmbl_33736: 302396-303992
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000032_390 0.0 - - PREDICTED: uncharacterized protein LOC105645663 [Jatropha curcas]
2 Hb_000045_050 0.0977622678 - - PREDICTED: probable zinc metalloprotease EGY2, chloroplastic [Jatropha curcas]
3 Hb_003494_030 0.1020908947 - - PREDICTED: protease Do-like 8, chloroplastic [Jatropha curcas]
4 Hb_006829_080 0.1024759299 - - PREDICTED: protein LHCP TRANSLOCATION DEFECT [Jatropha curcas]
5 Hb_000684_430 0.1067129677 - - PREDICTED: pentatricopeptide repeat-containing protein At5g02830, chloroplastic [Jatropha curcas]
6 Hb_000193_220 0.1072684757 - - PREDICTED: ribulose-phosphate 3-epimerase, chloroplastic [Jatropha curcas]
7 Hb_004055_160 0.1080924338 - - PREDICTED: glyoxylate/succinic semialdehyde reductase 2, chloroplastic [Jatropha curcas]
8 Hb_003948_020 0.1095790262 - - PREDICTED: transmembrane protein 41B [Jatropha curcas]
9 Hb_071079_020 0.1096590083 - - RNA polymerase sigma factor rpoD, putative [Ricinus communis]
10 Hb_000264_280 0.1096644744 - - PREDICTED: E3 ubiquitin-protein ligase RMA1H1-like [Jatropha curcas]
11 Hb_000803_170 0.1099549395 - - PREDICTED: uncharacterized protein LOC105648312 [Jatropha curcas]
12 Hb_005181_120 0.1123806212 - - PREDICTED: psbB mRNA maturation factor Mbb1, chloroplastic isoform X1 [Jatropha curcas]
13 Hb_000089_140 0.1125287739 - - PREDICTED: uncharacterized protein LOC105636682 isoform X2 [Jatropha curcas]
14 Hb_010721_020 0.1134918547 - - PREDICTED: photosynthetic NDH subunit of lumenal location 4, chloroplastic [Jatropha curcas]
15 Hb_001269_500 0.1147455271 - - PREDICTED: protein LOW PSII ACCUMULATION 3, chloroplastic-like isoform X2 [Populus euphratica]
16 Hb_000317_180 0.1168787973 - - PREDICTED: protein THYLAKOID FORMATION1, chloroplastic [Jatropha curcas]
17 Hb_002811_250 0.1172434579 - - PREDICTED: probable ribose-5-phosphate isomerase 3, chloroplastic [Jatropha curcas]
18 Hb_000548_060 0.1182039713 - - PREDICTED: fruit protein pKIWI502 [Jatropha curcas]
19 Hb_126917_010 0.1184653119 - - PREDICTED: uncharacterized protein LOC105646333 [Jatropha curcas]
20 Hb_000108_150 0.1196655059 - - alpha/beta hydrolase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000032_390 Hb_000032_390 Hb_000045_050 Hb_000045_050 Hb_000032_390--Hb_000045_050 Hb_003494_030 Hb_003494_030 Hb_000032_390--Hb_003494_030 Hb_006829_080 Hb_006829_080 Hb_000032_390--Hb_006829_080 Hb_000684_430 Hb_000684_430 Hb_000032_390--Hb_000684_430 Hb_000193_220 Hb_000193_220 Hb_000032_390--Hb_000193_220 Hb_004055_160 Hb_004055_160 Hb_000032_390--Hb_004055_160 Hb_000061_250 Hb_000061_250 Hb_000045_050--Hb_000061_250 Hb_000108_150 Hb_000108_150 Hb_000045_050--Hb_000108_150 Hb_000544_080 Hb_000544_080 Hb_000045_050--Hb_000544_080 Hb_003948_020 Hb_003948_020 Hb_000045_050--Hb_003948_020 Hb_002811_250 Hb_002811_250 Hb_000045_050--Hb_002811_250 Hb_005181_120 Hb_005181_120 Hb_000045_050--Hb_005181_120 Hb_002304_180 Hb_002304_180 Hb_003494_030--Hb_002304_180 Hb_002232_380 Hb_002232_380 Hb_003494_030--Hb_002232_380 Hb_003494_030--Hb_006829_080 Hb_003494_030--Hb_000193_220 Hb_000667_140 Hb_000667_140 Hb_003494_030--Hb_000667_140 Hb_001959_060 Hb_001959_060 Hb_006829_080--Hb_001959_060 Hb_000473_050 Hb_000473_050 Hb_006829_080--Hb_000473_050 Hb_006829_080--Hb_000684_430 Hb_006829_080--Hb_002232_380 Hb_006829_080--Hb_004055_160 Hb_000005_130 Hb_000005_130 Hb_006829_080--Hb_000005_130 Hb_000684_430--Hb_001959_060 Hb_000684_430--Hb_004055_160 Hb_002217_140 Hb_002217_140 Hb_000684_430--Hb_002217_140 Hb_148146_010 Hb_148146_010 Hb_000684_430--Hb_148146_010 Hb_002005_040 Hb_002005_040 Hb_000684_430--Hb_002005_040 Hb_010721_020 Hb_010721_020 Hb_000193_220--Hb_010721_020 Hb_000193_220--Hb_002811_250 Hb_000803_170 Hb_000803_170 Hb_000193_220--Hb_000803_170 Hb_007982_040 Hb_007982_040 Hb_000193_220--Hb_007982_040 Hb_000118_090 Hb_000118_090 Hb_000193_220--Hb_000118_090 Hb_000966_040 Hb_000966_040 Hb_000193_220--Hb_000966_040 Hb_004055_160--Hb_002005_040 Hb_009687_020 Hb_009687_020 Hb_004055_160--Hb_009687_020 Hb_005116_100 Hb_005116_100 Hb_004055_160--Hb_005116_100 Hb_001348_090 Hb_001348_090 Hb_004055_160--Hb_001348_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.943493 2.14407 9.92395 5.11373 1.50998 1.32412
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.902626 2.1734 1.4076 1.11143 19.2555

CAGE analysis