Hb_000032_440

Information

Type -
Description -
Location Contig32: 343147-346605
Sequence    

Annotation

kegg
ID rcu:RCOM_1692290
description protein with unknown function
nr
ID XP_002509976.1
description protein with unknown function [Ricinus communis]
swissprot
ID Q9ZPY9
description Phosphatidylinositol 4-kinase gamma 4 OS=Arabidopsis thaliana GN=PI4KG4 PE=1 SV=1
trembl
ID B9RCU2
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1692290 PE=4 SV=1
Gene Ontology
ID GO:0005515
description phosphatidylinositol 4-kinase gamma 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33743: 343091-346554 , PASA_asmbl_33744: 343091-346329 , PASA_asmbl_33745: 344272-344507
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000032_440 0.0 - - protein with unknown function [Ricinus communis]
2 Hb_000317_490 0.0991352839 - - Gibberellin receptor GID1, putative [Ricinus communis]
3 Hb_000708_040 0.1344628669 - - conserved hypothetical protein [Ricinus communis]
4 Hb_002284_310 0.1383632494 - - PREDICTED: uncharacterized protein LOC105635220 isoform X2 [Jatropha curcas]
5 Hb_000243_080 0.1390251857 - - PREDICTED: beta-galactosidase 3 [Jatropha curcas]
6 Hb_002183_070 0.143828127 - - PREDICTED: enoyl-[acyl-carrier-protein] reductase [NADH], chloroplastic-like [Jatropha curcas]
7 Hb_003016_020 0.1519142349 - - PREDICTED: 4-coumarate--CoA ligase-like 6 isoform X1 [Jatropha curcas]
8 Hb_000331_460 0.1573239476 - - PREDICTED: probable ubiquitin-like-specific protease 2A isoform X1 [Jatropha curcas]
9 Hb_002374_570 0.1593578664 - - PREDICTED: vesicle-associated protein 1-2-like [Jatropha curcas]
10 Hb_002016_170 0.1594253339 - - DNA binding protein, putative [Ricinus communis]
11 Hb_004225_080 0.1595680601 - - -
12 Hb_003849_100 0.1623898125 - - PREDICTED: putative transcription elongation factor SPT5 homolog 1 [Populus euphratica]
13 Hb_004204_140 0.1626847825 transcription factor TF Family: C2H2 hypothetical protein RCOM_1470470 [Ricinus communis]
14 Hb_000258_330 0.1631227667 - - Ran GTPase binding protein, putative [Ricinus communis]
15 Hb_171376_010 0.1645399241 - - PREDICTED: uncharacterized protein LOC105630877 isoform X1 [Jatropha curcas]
16 Hb_019516_080 0.1659502026 - - conserved hypothetical protein [Ricinus communis]
17 Hb_005433_040 0.1678900364 - - PREDICTED: U-box domain-containing protein 11-like [Jatropha curcas]
18 Hb_002234_060 0.1681514435 - - F-box protein, atfbl3, putative [Ricinus communis]
19 Hb_007479_050 0.169856215 - - PREDICTED: uncharacterized protein LOC105649412 [Jatropha curcas]
20 Hb_027746_010 0.1709130786 - - PREDICTED: glycerophosphodiester phosphodiesterase GDPD6 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000032_440 Hb_000032_440 Hb_000317_490 Hb_000317_490 Hb_000032_440--Hb_000317_490 Hb_000708_040 Hb_000708_040 Hb_000032_440--Hb_000708_040 Hb_002284_310 Hb_002284_310 Hb_000032_440--Hb_002284_310 Hb_000243_080 Hb_000243_080 Hb_000032_440--Hb_000243_080 Hb_002183_070 Hb_002183_070 Hb_000032_440--Hb_002183_070 Hb_003016_020 Hb_003016_020 Hb_000032_440--Hb_003016_020 Hb_002016_170 Hb_002016_170 Hb_000317_490--Hb_002016_170 Hb_000317_490--Hb_002183_070 Hb_011316_100 Hb_011316_100 Hb_000317_490--Hb_011316_100 Hb_000072_070 Hb_000072_070 Hb_000317_490--Hb_000072_070 Hb_000575_030 Hb_000575_030 Hb_000317_490--Hb_000575_030 Hb_000708_040--Hb_002284_310 Hb_000708_040--Hb_000317_490 Hb_003688_050 Hb_003688_050 Hb_000708_040--Hb_003688_050 Hb_002234_060 Hb_002234_060 Hb_000708_040--Hb_002234_060 Hb_000331_460 Hb_000331_460 Hb_000708_040--Hb_000331_460 Hb_000603_230 Hb_000603_230 Hb_002284_310--Hb_000603_230 Hb_003992_170 Hb_003992_170 Hb_002284_310--Hb_003992_170 Hb_002284_310--Hb_000331_460 Hb_002871_190 Hb_002871_190 Hb_002284_310--Hb_002871_190 Hb_004225_080 Hb_004225_080 Hb_002284_310--Hb_004225_080 Hb_004346_030 Hb_004346_030 Hb_002284_310--Hb_004346_030 Hb_019516_080 Hb_019516_080 Hb_000243_080--Hb_019516_080 Hb_000914_170 Hb_000914_170 Hb_000243_080--Hb_000914_170 Hb_000103_320 Hb_000103_320 Hb_000243_080--Hb_000103_320 Hb_000138_170 Hb_000138_170 Hb_000243_080--Hb_000138_170 Hb_003687_150 Hb_003687_150 Hb_000243_080--Hb_003687_150 Hb_000272_140 Hb_000272_140 Hb_000243_080--Hb_000272_140 Hb_000046_100 Hb_000046_100 Hb_002183_070--Hb_000046_100 Hb_002374_570 Hb_002374_570 Hb_002183_070--Hb_002374_570 Hb_003994_290 Hb_003994_290 Hb_002183_070--Hb_003994_290 Hb_002183_070--Hb_002016_170 Hb_021596_090 Hb_021596_090 Hb_002183_070--Hb_021596_090 Hb_013726_020 Hb_013726_020 Hb_003016_020--Hb_013726_020 Hb_001360_040 Hb_001360_040 Hb_003016_020--Hb_001360_040 Hb_008511_130 Hb_008511_130 Hb_003016_020--Hb_008511_130 Hb_003206_070 Hb_003206_070 Hb_003016_020--Hb_003206_070 Hb_000620_010 Hb_000620_010 Hb_003016_020--Hb_000620_010 Hb_000761_020 Hb_000761_020 Hb_003016_020--Hb_000761_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
35.8577 4.34319 31.1814 37.7517 10.0486 16.6436
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
44.9402 17.022 48.1708 8.48354 15.1529

CAGE analysis