Hb_000032_460

Information

Type -
Description -
Location Contig32: 357159-360910
Sequence    

Annotation

kegg
ID rcu:RCOM_1692330
description calcineurin B, putative
nr
ID XP_002509980.1
description calcineurin B, putative [Ricinus communis]
swissprot
ID Q9FUQ7
description Calcineurin B-like protein 8 OS=Arabidopsis thaliana GN=CBL8 PE=1 SV=1
trembl
ID B9RCU6
description Calcineurin B, putative OS=Ricinus communis GN=RCOM_1692330 PE=4 SV=1
Gene Ontology
ID GO:0005509
description calcineurin b-like protein 7

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33748: 358157-358636 , PASA_asmbl_33749: 359919-360227
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000032_460 0.0 - - calcineurin B, putative [Ricinus communis]
2 Hb_003688_210 0.187003857 - - replication factor A 1, rfa1, putative [Ricinus communis]
3 Hb_004449_060 0.1891180738 - - PREDICTED: uncharacterized protein LOC105631660 [Jatropha curcas]
4 Hb_010931_020 0.2155396175 - - Kunitz-type protease inhibitor KPI-F4 [Populus trichocarpa x Populus deltoides]
5 Hb_002301_110 0.2311603532 - - PREDICTED: protein E6-like [Populus euphratica]
6 Hb_003050_030 0.2446131548 - - Calcyclin-binding protein, putative [Ricinus communis]
7 Hb_005168_020 0.2447724083 - - PREDICTED: U-box domain-containing protein 30-like [Jatropha curcas]
8 Hb_002072_040 0.2494834376 - - PREDICTED: uncharacterized protein LOC105630881 [Jatropha curcas]
9 Hb_001472_110 0.2509613372 desease resistance Gene Name: TIR_2 nucleoside-triphosphatase, putative [Ricinus communis]
10 Hb_002339_030 0.2550296954 - - o-methyltransferase, putative [Ricinus communis]
11 Hb_000032_250 0.2604599295 - - PREDICTED: endoglucanase 6 [Jatropha curcas]
12 Hb_011861_030 0.2614751419 desease resistance Gene Name: NB-ARC putative disease resistance protein [Morus notabilis]
13 Hb_000165_200 0.2614770859 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
14 Hb_013726_010 0.2628298938 - - ATP binding protein, putative [Ricinus communis]
15 Hb_002248_010 0.265922483 - - PREDICTED: uncharacterized protein LOC105124180 [Populus euphratica]
16 Hb_004545_070 0.2669625434 - - PREDICTED: bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic-like [Jatropha curcas]
17 Hb_001675_170 0.2694476035 transcription factor TF Family: CPP PREDICTED: protein tesmin/TSO1-like CXC 5 [Malus domestica]
18 Hb_033312_080 0.2730371473 - - aldose-1-epimerase, putative [Ricinus communis]
19 Hb_008790_040 0.2732252048 - - PREDICTED: cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG8 [Jatropha curcas]
20 Hb_010334_050 0.2762967727 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000032_460 Hb_000032_460 Hb_003688_210 Hb_003688_210 Hb_000032_460--Hb_003688_210 Hb_004449_060 Hb_004449_060 Hb_000032_460--Hb_004449_060 Hb_010931_020 Hb_010931_020 Hb_000032_460--Hb_010931_020 Hb_002301_110 Hb_002301_110 Hb_000032_460--Hb_002301_110 Hb_003050_030 Hb_003050_030 Hb_000032_460--Hb_003050_030 Hb_005168_020 Hb_005168_020 Hb_000032_460--Hb_005168_020 Hb_004545_070 Hb_004545_070 Hb_003688_210--Hb_004545_070 Hb_002339_030 Hb_002339_030 Hb_003688_210--Hb_002339_030 Hb_002072_040 Hb_002072_040 Hb_003688_210--Hb_002072_040 Hb_003688_210--Hb_005168_020 Hb_000668_050 Hb_000668_050 Hb_003688_210--Hb_000668_050 Hb_002248_010 Hb_002248_010 Hb_004449_060--Hb_002248_010 Hb_001675_170 Hb_001675_170 Hb_004449_060--Hb_001675_170 Hb_002909_080 Hb_002909_080 Hb_004449_060--Hb_002909_080 Hb_001279_240 Hb_001279_240 Hb_004449_060--Hb_001279_240 Hb_004724_170 Hb_004724_170 Hb_004449_060--Hb_004724_170 Hb_005503_010 Hb_005503_010 Hb_010931_020--Hb_005503_010 Hb_007017_120 Hb_007017_120 Hb_010931_020--Hb_007017_120 Hb_000364_130 Hb_000364_130 Hb_010931_020--Hb_000364_130 Hb_001472_110 Hb_001472_110 Hb_010931_020--Hb_001472_110 Hb_026650_010 Hb_026650_010 Hb_010931_020--Hb_026650_010 Hb_010931_020--Hb_002339_030 Hb_001047_170 Hb_001047_170 Hb_002301_110--Hb_001047_170 Hb_002301_110--Hb_001472_110 Hb_164926_040 Hb_164926_040 Hb_002301_110--Hb_164926_040 Hb_002301_110--Hb_002072_040 Hb_000165_200 Hb_000165_200 Hb_002301_110--Hb_000165_200 Hb_002301_110--Hb_002339_030 Hb_003050_030--Hb_002301_110 Hb_003878_220 Hb_003878_220 Hb_003050_030--Hb_003878_220 Hb_001242_010 Hb_001242_010 Hb_003050_030--Hb_001242_010 Hb_003050_030--Hb_001472_110 Hb_007975_050 Hb_007975_050 Hb_003050_030--Hb_007975_050 Hb_005663_090 Hb_005663_090 Hb_005168_020--Hb_005663_090 Hb_000951_090 Hb_000951_090 Hb_005168_020--Hb_000951_090 Hb_005168_020--Hb_002072_040 Hb_000337_030 Hb_000337_030 Hb_005168_020--Hb_000337_030 Hb_000714_060 Hb_000714_060 Hb_005168_020--Hb_000714_060 Hb_000152_120 Hb_000152_120 Hb_005168_020--Hb_000152_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.209674 0.230715 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.144264 0.306312 0.159568

CAGE analysis