Hb_000032_470

Information

Type -
Description -
Location Contig32: 364564-365892
Sequence    

Annotation

kegg
ID mdm:103415826
description uncharacterized LOC103415826
nr
ID XP_008352330.1
description PREDICTED: uncharacterized protein LOC103415826 [Malus domestica]
swissprot
ID P09309
description E3 ubiquitin-protein ligase IE61 OS=Varicella-zoster virus (strain Dumas) GN=61 PE=1 SV=1
trembl
ID O81621
description F8M12.8 protein OS=Arabidopsis thaliana GN=F8M12.8 PE=4 SV=1
Gene Ontology
ID GO:0005515
description PREDICTED: uncharacterized protein At4g10930-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33750: 364920-392552
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000032_470 0.0 - - PREDICTED: uncharacterized protein LOC103415826 [Malus domestica]
2 Hb_002233_100 0.0974120604 - - PREDICTED: cleavage and polyadenylation specificity factor subunit 6-like [Malus domestica]
3 Hb_064903_010 0.1116634037 - - PREDICTED: T-complex protein 1 subunit delta [Jatropha curcas]
4 Hb_001440_040 0.1132777397 - - hypothetical protein POPTR_0008s03520g [Populus trichocarpa]
5 Hb_048476_170 0.1158741141 - - PREDICTED: cleavage and polyadenylation specificity factor subunit 3-II-like [Citrus sinensis]
6 Hb_014267_010 0.1249307176 - - PREDICTED: dnaJ homolog subfamily C GRV2 isoform X1 [Jatropha curcas]
7 Hb_000832_130 0.1257809087 - - PREDICTED: pentatricopeptide repeat-containing protein At2g39620 [Jatropha curcas]
8 Hb_010578_060 0.1271928855 - - PREDICTED: mediator of RNA polymerase II transcription subunit 14 [Jatropha curcas]
9 Hb_004137_060 0.1296844856 - - PREDICTED: pentatricopeptide repeat-containing protein At3g09040, mitochondrial [Jatropha curcas]
10 Hb_005488_150 0.1323914739 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
11 Hb_010874_040 0.1339551628 - - PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At3g13880 [Jatropha curcas]
12 Hb_002232_030 0.1352803658 - - Pinin, putative [Ricinus communis]
13 Hb_004718_010 0.1376300738 - - PREDICTED: uncharacterized protein LOC105638290 [Jatropha curcas]
14 Hb_006637_050 0.138141361 - - PREDICTED: ethylene-insensitive protein 2 [Jatropha curcas]
15 Hb_004117_100 0.1395484575 - - Vacuolar sorting receptor 1 precursor, putative [Ricinus communis]
16 Hb_004228_010 0.1403558205 - - PREDICTED: BEACH domain-containing protein lvsA [Jatropha curcas]
17 Hb_000069_320 0.1404182801 - - PREDICTED: uncharacterized protein LOC105642846 [Jatropha curcas]
18 Hb_000514_060 0.1404822396 transcription factor TF Family: LUG PREDICTED: transcriptional corepressor LEUNIG isoform X1 [Jatropha curcas]
19 Hb_111985_080 0.1409308432 - - PREDICTED: pentatricopeptide repeat-containing protein At1g19720 [Jatropha curcas]
20 Hb_001967_030 0.1417586856 - - PREDICTED: uncharacterized protein LOC105633557 [Jatropha curcas]

Gene co-expression network

sample Hb_000032_470 Hb_000032_470 Hb_002233_100 Hb_002233_100 Hb_000032_470--Hb_002233_100 Hb_064903_010 Hb_064903_010 Hb_000032_470--Hb_064903_010 Hb_001440_040 Hb_001440_040 Hb_000032_470--Hb_001440_040 Hb_048476_170 Hb_048476_170 Hb_000032_470--Hb_048476_170 Hb_014267_010 Hb_014267_010 Hb_000032_470--Hb_014267_010 Hb_000832_130 Hb_000832_130 Hb_000032_470--Hb_000832_130 Hb_000041_090 Hb_000041_090 Hb_002233_100--Hb_000041_090 Hb_000046_190 Hb_000046_190 Hb_002233_100--Hb_000046_190 Hb_004108_100 Hb_004108_100 Hb_002233_100--Hb_004108_100 Hb_000853_210 Hb_000853_210 Hb_002233_100--Hb_000853_210 Hb_002233_100--Hb_014267_010 Hb_002233_100--Hb_064903_010 Hb_000768_190 Hb_000768_190 Hb_064903_010--Hb_000768_190 Hb_111985_080 Hb_111985_080 Hb_064903_010--Hb_111985_080 Hb_002301_080 Hb_002301_080 Hb_064903_010--Hb_002301_080 Hb_003847_120 Hb_003847_120 Hb_064903_010--Hb_003847_120 Hb_064903_010--Hb_000832_130 Hb_003044_020 Hb_003044_020 Hb_064903_010--Hb_003044_020 Hb_001235_230 Hb_001235_230 Hb_001440_040--Hb_001235_230 Hb_001401_060 Hb_001401_060 Hb_001440_040--Hb_001401_060 Hb_032920_130 Hb_032920_130 Hb_001440_040--Hb_032920_130 Hb_005488_150 Hb_005488_150 Hb_001440_040--Hb_005488_150 Hb_002044_170 Hb_002044_170 Hb_001440_040--Hb_002044_170 Hb_000069_320 Hb_000069_320 Hb_001440_040--Hb_000069_320 Hb_002890_180 Hb_002890_180 Hb_048476_170--Hb_002890_180 Hb_004117_100 Hb_004117_100 Hb_048476_170--Hb_004117_100 Hb_001136_090 Hb_001136_090 Hb_048476_170--Hb_001136_090 Hb_000463_140 Hb_000463_140 Hb_048476_170--Hb_000463_140 Hb_048476_170--Hb_000832_130 Hb_007304_110 Hb_007304_110 Hb_048476_170--Hb_007304_110 Hb_012656_030 Hb_012656_030 Hb_014267_010--Hb_012656_030 Hb_000318_390 Hb_000318_390 Hb_014267_010--Hb_000318_390 Hb_001967_030 Hb_001967_030 Hb_014267_010--Hb_001967_030 Hb_000796_030 Hb_000796_030 Hb_014267_010--Hb_000796_030 Hb_004228_010 Hb_004228_010 Hb_014267_010--Hb_004228_010 Hb_010417_050 Hb_010417_050 Hb_014267_010--Hb_010417_050 Hb_000951_110 Hb_000951_110 Hb_000832_130--Hb_000951_110 Hb_004718_010 Hb_004718_010 Hb_000832_130--Hb_004718_010 Hb_010578_060 Hb_010578_060 Hb_000832_130--Hb_010578_060 Hb_002471_210 Hb_002471_210 Hb_000832_130--Hb_002471_210 Hb_000832_130--Hb_111985_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.66297 12.3116 3.74998 3.63403 16.9515 12.8895
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.43812 2.55348 12.9855 6.57781 10.3427

CAGE analysis