Hb_000032_520

Information

Type -
Description -
Location Contig32: 414124-417819
Sequence    

Annotation

kegg
ID cic:CICLE_v10021394mg
description hypothetical protein
nr
ID XP_012086695.1
description PREDICTED: F-box protein SKIP8-like [Jatropha curcas]
swissprot
ID Q93YV9
description F-box protein SKIP8 OS=Arabidopsis thaliana GN=SKIP8 PE=1 SV=1
trembl
ID A0A067JMT0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20432 PE=4 SV=1
Gene Ontology
ID GO:0005515
description f-box protein skip8

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33764: 415656-417823
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000032_520 0.0 - - PREDICTED: F-box protein SKIP8-like [Jatropha curcas]
2 Hb_015934_040 0.0557298329 - - PREDICTED: protein Hook homolog 3-like [Jatropha curcas]
3 Hb_001538_130 0.0597714737 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000003_590 0.0646844494 - - PREDICTED: uncharacterized protein LOC105631550 isoform X2 [Jatropha curcas]
5 Hb_000792_010 0.0667770867 - - PREDICTED: mRNA-capping enzyme [Jatropha curcas]
6 Hb_019863_070 0.0714375984 - - PREDICTED: regulatory-associated protein of TOR 1 isoform X1 [Jatropha curcas]
7 Hb_010618_010 0.0728577312 - - PREDICTED: inactive poly [ADP-ribose] polymerase RCD1 [Jatropha curcas]
8 Hb_011386_010 0.0738717009 - - mitochondrial carrier protein, putative [Ricinus communis]
9 Hb_015807_150 0.0740630585 - - actin binding protein, putative [Ricinus communis]
10 Hb_009767_110 0.0753099231 - - -
11 Hb_000025_640 0.0755711003 - - PREDICTED: probable magnesium transporter NIPA6 isoform X1 [Jatropha curcas]
12 Hb_001377_490 0.075594325 - - PREDICTED: uncharacterized protein LOC105642821 [Jatropha curcas]
13 Hb_000029_300 0.0759429215 - - hypothetical protein JCGZ_10048 [Jatropha curcas]
14 Hb_000329_710 0.0760327451 - - PREDICTED: E3 ubiquitin-protein ligase BRE1-like 1 isoform X1 [Jatropha curcas]
15 Hb_000107_330 0.0760628994 - - PREDICTED: pentatricopeptide repeat-containing protein At4g38150 [Jatropha curcas]
16 Hb_008554_130 0.0762934276 transcription factor TF Family: MYB PREDICTED: uncharacterized protein LOC105634317 [Jatropha curcas]
17 Hb_002078_350 0.0764727877 - - hypothetical protein B456_005G166600 [Gossypium raimondii]
18 Hb_000340_530 0.0768903522 - - hypothetical protein VITISV_016664 [Vitis vinifera]
19 Hb_005054_090 0.0769070815 - - PREDICTED: uncharacterized protein At2g39910 isoform X1 [Jatropha curcas]
20 Hb_000049_260 0.0780844937 - - WD-repeat protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000032_520 Hb_000032_520 Hb_015934_040 Hb_015934_040 Hb_000032_520--Hb_015934_040 Hb_001538_130 Hb_001538_130 Hb_000032_520--Hb_001538_130 Hb_000003_590 Hb_000003_590 Hb_000032_520--Hb_000003_590 Hb_000792_010 Hb_000792_010 Hb_000032_520--Hb_000792_010 Hb_019863_070 Hb_019863_070 Hb_000032_520--Hb_019863_070 Hb_010618_010 Hb_010618_010 Hb_000032_520--Hb_010618_010 Hb_015934_040--Hb_010618_010 Hb_000297_010 Hb_000297_010 Hb_015934_040--Hb_000297_010 Hb_000331_670 Hb_000331_670 Hb_015934_040--Hb_000331_670 Hb_010128_080 Hb_010128_080 Hb_015934_040--Hb_010128_080 Hb_001248_060 Hb_001248_060 Hb_015934_040--Hb_001248_060 Hb_001198_100 Hb_001198_100 Hb_001538_130--Hb_001198_100 Hb_000395_190 Hb_000395_190 Hb_001538_130--Hb_000395_190 Hb_000009_560 Hb_000009_560 Hb_001538_130--Hb_000009_560 Hb_001538_130--Hb_015934_040 Hb_000035_320 Hb_000035_320 Hb_001538_130--Hb_000035_320 Hb_002110_190 Hb_002110_190 Hb_000003_590--Hb_002110_190 Hb_001377_490 Hb_001377_490 Hb_000003_590--Hb_001377_490 Hb_004567_090 Hb_004567_090 Hb_000003_590--Hb_004567_090 Hb_001377_510 Hb_001377_510 Hb_000003_590--Hb_001377_510 Hb_000487_270 Hb_000487_270 Hb_000003_590--Hb_000487_270 Hb_000329_710 Hb_000329_710 Hb_000792_010--Hb_000329_710 Hb_002518_260 Hb_002518_260 Hb_000792_010--Hb_002518_260 Hb_000028_480 Hb_000028_480 Hb_000792_010--Hb_000028_480 Hb_003411_040 Hb_003411_040 Hb_000792_010--Hb_003411_040 Hb_001004_060 Hb_001004_060 Hb_000792_010--Hb_001004_060 Hb_011386_010 Hb_011386_010 Hb_000792_010--Hb_011386_010 Hb_002818_030 Hb_002818_030 Hb_019863_070--Hb_002818_030 Hb_003849_110 Hb_003849_110 Hb_019863_070--Hb_003849_110 Hb_000868_090 Hb_000868_090 Hb_019863_070--Hb_000868_090 Hb_005054_110 Hb_005054_110 Hb_019863_070--Hb_005054_110 Hb_000258_160 Hb_000258_160 Hb_019863_070--Hb_000258_160 Hb_015807_150 Hb_015807_150 Hb_019863_070--Hb_015807_150 Hb_010618_010--Hb_001248_060 Hb_001409_020 Hb_001409_020 Hb_010618_010--Hb_001409_020 Hb_000225_040 Hb_000225_040 Hb_010618_010--Hb_000225_040 Hb_002518_280 Hb_002518_280 Hb_010618_010--Hb_002518_280 Hb_011995_010 Hb_011995_010 Hb_010618_010--Hb_011995_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.97338 7.60774 3.68687 6.94343 7.31974 7.97451
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.76995 8.86731 7.66642 6.00979 6.38725

CAGE analysis