Hb_000032_530

Information

Type -
Description -
Location Contig32: 419577-420212
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33765: 419821-420634
cDNA
(Sanger)
(ID:Location)		 049_D11.ab1: 419823-420550

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000032_530 0.0 - - -
2 Hb_010997_100 0.2441813041 transcription factor TF Family: mTERF -
3 Hb_097433_020 0.2831711385 - - ATP-binding cassette transporter, putative [Ricinus communis]
4 Hb_004650_090 0.2851569505 - - -
5 Hb_001300_050 0.2928269162 - - -
6 Hb_005715_020 0.29632678 - - PREDICTED: ras-related protein RABC2a-like isoform X2 [Jatropha curcas]
7 Hb_089341_010 0.3022733337 - - Uncharacterized protein TCM_018339 [Theobroma cacao]
8 Hb_018118_020 0.3036797135 - - unnamed protein product [Vitis vinifera]
9 Hb_116638_010 0.3092542829 - - conserved hypothetical protein [Ricinus communis]
10 Hb_076233_020 0.3113720897 transcription factor TF Family: C2H2 PREDICTED: dnaJ homolog subfamily C member 21 [Populus euphratica]
11 Hb_082945_020 0.3116201491 - - PREDICTED: pentatricopeptide repeat-containing protein At5g66520-like [Jatropha curcas]
12 Hb_159307_010 0.3121226462 - - PREDICTED: probable isoleucine--tRNA ligase, cytoplasmic [Jatropha curcas]
13 Hb_005203_050 0.3142103489 - - anthocyanidin 3-O-glucosyltransferase [Hevea brasiliensis]
14 Hb_006816_340 0.315538957 - - -
15 Hb_000062_500 0.3176803758 - - PREDICTED: urease-like [Zea mays]
16 Hb_001114_230 0.3193453908 - - -
17 Hb_000298_080 0.3215800889 - - -
18 Hb_000334_200 0.3222822295 desease resistance Gene Name: RVT_1 PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
19 Hb_103790_010 0.3248904814 - - PREDICTED: pre-mRNA-processing protein 40A isoform X4 [Jatropha curcas]
20 Hb_009372_010 0.3290476126 - - -

Gene co-expression network

sample Hb_000032_530 Hb_000032_530 Hb_010997_100 Hb_010997_100 Hb_000032_530--Hb_010997_100 Hb_097433_020 Hb_097433_020 Hb_000032_530--Hb_097433_020 Hb_004650_090 Hb_004650_090 Hb_000032_530--Hb_004650_090 Hb_001300_050 Hb_001300_050 Hb_000032_530--Hb_001300_050 Hb_005715_020 Hb_005715_020 Hb_000032_530--Hb_005715_020 Hb_089341_010 Hb_089341_010 Hb_000032_530--Hb_089341_010 Hb_010997_100--Hb_005715_020 Hb_120384_010 Hb_120384_010 Hb_010997_100--Hb_120384_010 Hb_000062_500 Hb_000062_500 Hb_010997_100--Hb_000062_500 Hb_003647_010 Hb_003647_010 Hb_010997_100--Hb_003647_010 Hb_032018_010 Hb_032018_010 Hb_010997_100--Hb_032018_010 Hb_057217_010 Hb_057217_010 Hb_097433_020--Hb_057217_010 Hb_097433_020--Hb_005715_020 Hb_000334_200 Hb_000334_200 Hb_097433_020--Hb_000334_200 Hb_002737_020 Hb_002737_020 Hb_097433_020--Hb_002737_020 Hb_018118_020 Hb_018118_020 Hb_097433_020--Hb_018118_020 Hb_050495_010 Hb_050495_010 Hb_097433_020--Hb_050495_010 Hb_000580_040 Hb_000580_040 Hb_004650_090--Hb_000580_040 Hb_004650_090--Hb_005715_020 Hb_004650_090--Hb_000062_500 Hb_007545_160 Hb_007545_160 Hb_004650_090--Hb_007545_160 Hb_043950_010 Hb_043950_010 Hb_004650_090--Hb_043950_010 Hb_173423_010 Hb_173423_010 Hb_004650_090--Hb_173423_010 Hb_007136_020 Hb_007136_020 Hb_001300_050--Hb_007136_020 Hb_103790_010 Hb_103790_010 Hb_001300_050--Hb_103790_010 Hb_130134_020 Hb_130134_020 Hb_001300_050--Hb_130134_020 Hb_006816_340 Hb_006816_340 Hb_001300_050--Hb_006816_340 Hb_002291_040 Hb_002291_040 Hb_001300_050--Hb_002291_040 Hb_000003_180 Hb_000003_180 Hb_001300_050--Hb_000003_180 Hb_007021_030 Hb_007021_030 Hb_005715_020--Hb_007021_030 Hb_005715_020--Hb_018118_020 Hb_001396_150 Hb_001396_150 Hb_005715_020--Hb_001396_150 Hb_002426_010 Hb_002426_010 Hb_089341_010--Hb_002426_010 Hb_002003_110 Hb_002003_110 Hb_089341_010--Hb_002003_110 Hb_004483_020 Hb_004483_020 Hb_089341_010--Hb_004483_020 Hb_001303_070 Hb_001303_070 Hb_089341_010--Hb_001303_070 Hb_137515_010 Hb_137515_010 Hb_089341_010--Hb_137515_010 Hb_061365_010 Hb_061365_010 Hb_089341_010--Hb_061365_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
17.5189 235.323 31.8885 22.319 30.1289 298
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 28.2539 6.24111 0 0

CAGE analysis