Hb_000032_540

Information

Type -
Description -
Location Contig32: 422025-422279
Sequence    

Annotation

kegg
ID rcu:RCOM_1692440
description hypothetical protein
nr
ID XP_012086697.1
description PREDICTED: mediator-associated protein 3-like [Jatropha curcas]
swissprot
ID Q9FHX8
description Mediator-associated protein 3 OS=Arabidopsis thaliana GN=At5g42060 PE=1 SV=1
trembl
ID B9RCV6
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1692440 PE=4 SV=1
Gene Ontology
ID GO:0003677
description rna polymerase ii transcriptional coactivator kelp-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33766: 421911-423527
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000032_540 0.0 - - PREDICTED: mediator-associated protein 3-like [Jatropha curcas]
2 Hb_002259_030 0.0718408361 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000189_530 0.0906835497 - - 40S ribosomal protein S24B [Hevea brasiliensis]
4 Hb_011161_040 0.0954930217 - - PREDICTED: uncharacterized protein LOC105638905 isoform X2 [Jatropha curcas]
5 Hb_000175_400 0.0961650487 - - conserved hypothetical protein [Ricinus communis]
6 Hb_011016_090 0.0983702274 - - PREDICTED: 50S ribosomal protein L24, chloroplastic [Populus euphratica]
7 Hb_000144_090 0.1006794879 transcription factor TF Family: GNAT Glucosamine 6-phosphate N-acetyltransferase, putative [Ricinus communis]
8 Hb_023226_010 0.102596 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-7-like isoform X1 [Jatropha curcas]
9 Hb_102156_010 0.1045272661 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000193_350 0.1065115495 - - eukaryotic translation initiation factor 5A isoform VI [Hevea brasiliensis]
11 Hb_004453_150 0.1069951673 - - BnaC02g13240D [Brassica napus]
12 Hb_002078_050 0.1122215895 - - PREDICTED: protein kish-like [Nicotiana tomentosiformis]
13 Hb_000510_090 0.1142885683 - - 40S ribosomal protein S15 [Morus notabilis]
14 Hb_034585_030 0.1156154438 transcription factor TF Family: C2C2-Dof dof zinc finger protein DOF3.4 [Jatropha curcas]
15 Hb_001976_050 0.1172131242 - - PREDICTED: protein SKIP34 [Jatropha curcas]
16 Hb_007166_050 0.1175556963 - - -
17 Hb_001019_090 0.1187117543 - - PREDICTED: uncharacterized protein LOC105639312 isoform X2 [Jatropha curcas]
18 Hb_004297_100 0.1217062514 - - PREDICTED: 60S acidic ribosomal protein P2B-like [Populus euphratica]
19 Hb_000347_340 0.1224661623 - - ring finger, putative [Ricinus communis]
20 Hb_000752_060 0.1271870856 - - expressed protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000032_540 Hb_000032_540 Hb_002259_030 Hb_002259_030 Hb_000032_540--Hb_002259_030 Hb_000189_530 Hb_000189_530 Hb_000032_540--Hb_000189_530 Hb_011161_040 Hb_011161_040 Hb_000032_540--Hb_011161_040 Hb_000175_400 Hb_000175_400 Hb_000032_540--Hb_000175_400 Hb_011016_090 Hb_011016_090 Hb_000032_540--Hb_011016_090 Hb_000144_090 Hb_000144_090 Hb_000032_540--Hb_000144_090 Hb_002259_030--Hb_000175_400 Hb_002259_030--Hb_011016_090 Hb_004453_150 Hb_004453_150 Hb_002259_030--Hb_004453_150 Hb_000156_130 Hb_000156_130 Hb_002259_030--Hb_000156_130 Hb_001454_140 Hb_001454_140 Hb_002259_030--Hb_001454_140 Hb_001019_090 Hb_001019_090 Hb_000189_530--Hb_001019_090 Hb_000617_320 Hb_000617_320 Hb_000189_530--Hb_000617_320 Hb_000366_100 Hb_000366_100 Hb_000189_530--Hb_000366_100 Hb_000152_430 Hb_000152_430 Hb_000189_530--Hb_000152_430 Hb_007166_050 Hb_007166_050 Hb_000189_530--Hb_007166_050 Hb_000193_350 Hb_000193_350 Hb_000189_530--Hb_000193_350 Hb_011161_040--Hb_004453_150 Hb_011139_020 Hb_011139_020 Hb_011161_040--Hb_011139_020 Hb_011161_040--Hb_001019_090 Hb_025193_050 Hb_025193_050 Hb_011161_040--Hb_025193_050 Hb_011161_040--Hb_000152_430 Hb_001133_020 Hb_001133_020 Hb_011161_040--Hb_001133_020 Hb_000175_400--Hb_000193_350 Hb_000175_400--Hb_004453_150 Hb_000175_400--Hb_025193_050 Hb_000175_400--Hb_011016_090 Hb_000089_130 Hb_000089_130 Hb_000175_400--Hb_000089_130 Hb_011016_090--Hb_000189_530 Hb_011016_090--Hb_000193_350 Hb_011016_090--Hb_004453_150 Hb_023226_010 Hb_023226_010 Hb_000144_090--Hb_023226_010 Hb_000144_090--Hb_011161_040 Hb_008173_120 Hb_008173_120 Hb_000144_090--Hb_008173_120 Hb_007193_100 Hb_007193_100 Hb_000144_090--Hb_007193_100 Hb_007317_060 Hb_007317_060 Hb_000144_090--Hb_007317_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
175.031 37.3045 9.26233 63.9123 100.847 330.498
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
184.22 244.894 135.956 37.6106 8.38967

CAGE analysis