Hb_000032_570

Information

Type transcription factor
Description TF Family: Coactivator p15
Location Contig32: 426597-429337
Sequence    

Annotation

kegg
ID rcu:RCOM_1692450
description RNA polymerase II transcriptional coactivator kelp, putative
nr
ID XP_012086698.1
description PREDICTED: RNA polymerase II transcriptional coactivator KELP [Jatropha curcas]
swissprot
ID O65155
description RNA polymerase II transcriptional coactivator KELP OS=Arabidopsis thaliana GN=KELP PE=1 SV=1
trembl
ID A0A067K0G9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20435 PE=4 SV=1
Gene Ontology
ID GO:0003677
description rna polymerase ii transcriptional coactivator kelp-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33768: 426735-429221 , PASA_asmbl_33770: 427326-427717
cDNA
(Sanger)
(ID:Location)		 034_O23.ab1: 426735-429133

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000032_570 0.0 transcription factor TF Family: Coactivator p15 PREDICTED: RNA polymerase II transcriptional coactivator KELP [Jatropha curcas]
2 Hb_003392_040 0.0599504212 - - PREDICTED: D-aminoacyl-tRNA deacylase [Jatropha curcas]
3 Hb_001030_120 0.0599906361 - - PREDICTED: tyrosine--tRNA ligase, cytoplasmic-like [Jatropha curcas]
4 Hb_028872_140 0.0621031965 - - PREDICTED: uncharacterized protein LOC105644767 isoform X1 [Jatropha curcas]
5 Hb_000169_010 0.0633713926 - - PREDICTED: RING finger and CHY zinc finger domain-containing protein 1 [Jatropha curcas]
6 Hb_003728_020 0.0636427762 - - conserved hypothetical protein [Ricinus communis]
7 Hb_006692_030 0.0648594785 - - PREDICTED: uncharacterized protein LOC105632913 [Jatropha curcas]
8 Hb_000720_120 0.064996105 - - PREDICTED: general transcription factor IIE subunit 2-like [Jatropha curcas]
9 Hb_015001_020 0.0652563409 - - PREDICTED: la-related protein 6B [Jatropha curcas]
10 Hb_001571_040 0.0656392855 - - PREDICTED: uncharacterized protein LOC105643972 [Jatropha curcas]
11 Hb_002272_250 0.0666037184 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
12 Hb_002097_110 0.0697804954 - - ankyrin repeat-containing protein, putative [Ricinus communis]
13 Hb_133271_020 0.0698593411 - - prohibitin, putative [Ricinus communis]
14 Hb_007426_230 0.0707327362 - - hypothetical protein CICLE_v10017932mg [Citrus clementina]
15 Hb_004195_160 0.071405329 - - PREDICTED: uncharacterized protein LOC105634617 [Jatropha curcas]
16 Hb_009111_050 0.0714847414 transcription factor TF Family: Jumonji PREDICTED: pentatricopeptide repeat-containing protein At5g06540 [Populus euphratica]
17 Hb_158092_070 0.0715776234 - - PREDICTED: cytochrome b-c1 complex subunit Rieske-4, mitochondrial-like [Jatropha curcas]
18 Hb_028639_060 0.0717256947 - - transporter, putative [Ricinus communis]
19 Hb_033642_010 0.0727427583 - - PREDICTED: protection of telomeres protein 1a-like isoform X2 [Jatropha curcas]
20 Hb_001454_210 0.0743799407 - - PREDICTED: uncharacterized protein LOC105643435 [Jatropha curcas]

Gene co-expression network

sample Hb_000032_570 Hb_000032_570 Hb_003392_040 Hb_003392_040 Hb_000032_570--Hb_003392_040 Hb_001030_120 Hb_001030_120 Hb_000032_570--Hb_001030_120 Hb_028872_140 Hb_028872_140 Hb_000032_570--Hb_028872_140 Hb_000169_010 Hb_000169_010 Hb_000032_570--Hb_000169_010 Hb_003728_020 Hb_003728_020 Hb_000032_570--Hb_003728_020 Hb_006692_030 Hb_006692_030 Hb_000032_570--Hb_006692_030 Hb_003058_130 Hb_003058_130 Hb_003392_040--Hb_003058_130 Hb_003392_040--Hb_000169_010 Hb_011689_080 Hb_011689_080 Hb_003392_040--Hb_011689_080 Hb_001377_290 Hb_001377_290 Hb_003392_040--Hb_001377_290 Hb_000720_120 Hb_000720_120 Hb_003392_040--Hb_000720_120 Hb_004195_160 Hb_004195_160 Hb_001030_120--Hb_004195_160 Hb_002686_270 Hb_002686_270 Hb_001030_120--Hb_002686_270 Hb_009111_050 Hb_009111_050 Hb_001030_120--Hb_009111_050 Hb_005062_070 Hb_005062_070 Hb_001030_120--Hb_005062_070 Hb_001030_120--Hb_028872_140 Hb_001454_210 Hb_001454_210 Hb_028872_140--Hb_001454_210 Hb_000398_180 Hb_000398_180 Hb_028872_140--Hb_000398_180 Hb_033642_010 Hb_033642_010 Hb_028872_140--Hb_033642_010 Hb_028872_140--Hb_009111_050 Hb_002811_360 Hb_002811_360 Hb_028872_140--Hb_002811_360 Hb_015306_020 Hb_015306_020 Hb_028872_140--Hb_015306_020 Hb_000169_010--Hb_000720_120 Hb_005539_030 Hb_005539_030 Hb_000169_010--Hb_005539_030 Hb_007254_040 Hb_007254_040 Hb_000169_010--Hb_007254_040 Hb_001135_050 Hb_001135_050 Hb_000169_010--Hb_001135_050 Hb_005527_050 Hb_005527_050 Hb_003728_020--Hb_005527_050 Hb_150069_020 Hb_150069_020 Hb_003728_020--Hb_150069_020 Hb_000012_090 Hb_000012_090 Hb_003728_020--Hb_000012_090 Hb_001811_150 Hb_001811_150 Hb_003728_020--Hb_001811_150 Hb_000322_050 Hb_000322_050 Hb_003728_020--Hb_000322_050 Hb_009133_010 Hb_009133_010 Hb_006692_030--Hb_009133_010 Hb_007218_080 Hb_007218_080 Hb_006692_030--Hb_007218_080 Hb_000889_020 Hb_000889_020 Hb_006692_030--Hb_000889_020 Hb_001789_240 Hb_001789_240 Hb_006692_030--Hb_001789_240 Hb_000120_500 Hb_000120_500 Hb_006692_030--Hb_000120_500
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
151.913 47.9626 31.3548 37.5164 136.277 168.115
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
148.402 136.941 105.73 80.607 34.2589

CAGE analysis