Hb_000032_600

Information

Type -
Description -
Location Contig32: 445000-447310
Sequence    

Annotation

kegg
ID tcc:TCM_016497
description DCD domain protein isoform 1
nr
ID XP_012086700.1
description PREDICTED: B2 protein [Jatropha curcas]
swissprot
ID P37707
description B2 protein OS=Daucus carota PE=2 SV=1
trembl
ID A0A067JN41
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20438 PE=4 SV=1
Gene Ontology
ID GO:0005622
description b2 protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33774: 445079-447281
cDNA
(Sanger)
(ID:Location)		 003_G07.ab1: 446576-447281 , 039_M24.ab1: 446695-447281

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000032_600 0.0 - - PREDICTED: B2 protein [Jatropha curcas]
2 Hb_067664_010 0.0804184791 - - PREDICTED: putative disease resistance protein RGA1 [Jatropha curcas]
3 Hb_001054_060 0.0815703156 - - PREDICTED: dihydropyrimidine dehydrogenase [NADP(+)] [Jatropha curcas]
4 Hb_000977_150 0.0919513586 - - latex cyanogenic beta glucosidase [Hevea brasiliensis]
5 Hb_178968_080 0.0984157513 - - PREDICTED: serine/threonine-protein kinase OSR1 isoform X2 [Jatropha curcas]
6 Hb_000130_200 0.1006393522 - - PREDICTED: putative serine/threonine-protein kinase isoform X3 [Jatropha curcas]
7 Hb_001754_120 0.1060843884 - - PREDICTED: probable protein phosphatase 2C 40 [Jatropha curcas]
8 Hb_000622_060 0.1094622234 - - PREDICTED: uncharacterized protein At5g05190-like isoform X1 [Jatropha curcas]
9 Hb_033152_110 0.1095278879 transcription factor TF Family: G2-like PREDICTED: probable transcription factor KAN3 [Jatropha curcas]
10 Hb_000070_110 0.1097852661 - - PREDICTED: uncharacterized protein LOC105645744 isoform X1 [Jatropha curcas]
11 Hb_000115_360 0.1275770319 - - PREDICTED: probable protein phosphatase 2C 15 isoform X3 [Jatropha curcas]
12 Hb_001124_140 0.1326423832 - - PREDICTED: inactive beta-amylase 9 [Jatropha curcas]
13 Hb_000997_290 0.1327651869 - - PREDICTED: acylamino-acid-releasing enzyme [Jatropha curcas]
14 Hb_001040_150 0.1334113577 - - conserved hypothetical protein [Ricinus communis]
15 Hb_187959_010 0.1334532392 - - hypothetical protein JCGZ_12266 [Jatropha curcas]
16 Hb_007229_050 0.1344678703 - - PREDICTED: palmitoyl-protein thioesterase 1 isoform X1 [Jatropha curcas]
17 Hb_006185_030 0.1368399197 - - threonine synthase, putative [Ricinus communis]
18 Hb_009803_020 0.1388118586 - - hypothetical protein PRUPE_ppa006317mg [Prunus persica]
19 Hb_002811_200 0.13919054 - - PREDICTED: protein IQ-DOMAIN 14-like [Jatropha curcas]
20 Hb_004129_010 0.1414125994 - - aspartate aminotransferase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000032_600 Hb_000032_600 Hb_067664_010 Hb_067664_010 Hb_000032_600--Hb_067664_010 Hb_001054_060 Hb_001054_060 Hb_000032_600--Hb_001054_060 Hb_000977_150 Hb_000977_150 Hb_000032_600--Hb_000977_150 Hb_178968_080 Hb_178968_080 Hb_000032_600--Hb_178968_080 Hb_000130_200 Hb_000130_200 Hb_000032_600--Hb_000130_200 Hb_001754_120 Hb_001754_120 Hb_000032_600--Hb_001754_120 Hb_067664_010--Hb_001054_060 Hb_067664_010--Hb_000977_150 Hb_067664_010--Hb_001754_120 Hb_000997_290 Hb_000997_290 Hb_067664_010--Hb_000997_290 Hb_001124_140 Hb_001124_140 Hb_067664_010--Hb_001124_140 Hb_187959_010 Hb_187959_010 Hb_001054_060--Hb_187959_010 Hb_001054_060--Hb_000977_150 Hb_030312_030 Hb_030312_030 Hb_001054_060--Hb_030312_030 Hb_000997_320 Hb_000997_320 Hb_001054_060--Hb_000997_320 Hb_002811_190 Hb_002811_190 Hb_000977_150--Hb_002811_190 Hb_000329_080 Hb_000329_080 Hb_000977_150--Hb_000329_080 Hb_001195_370 Hb_001195_370 Hb_000977_150--Hb_001195_370 Hb_178968_080--Hb_000130_200 Hb_000070_110 Hb_000070_110 Hb_178968_080--Hb_000070_110 Hb_001040_150 Hb_001040_150 Hb_178968_080--Hb_001040_150 Hb_000622_060 Hb_000622_060 Hb_178968_080--Hb_000622_060 Hb_178968_080--Hb_001054_060 Hb_000130_200--Hb_000070_110 Hb_000130_200--Hb_000622_060 Hb_033152_110 Hb_033152_110 Hb_000130_200--Hb_033152_110 Hb_002529_090 Hb_002529_090 Hb_000130_200--Hb_002529_090 Hb_001754_120--Hb_033152_110 Hb_000979_260 Hb_000979_260 Hb_001754_120--Hb_000979_260 Hb_005731_100 Hb_005731_100 Hb_001754_120--Hb_005731_100 Hb_001754_120--Hb_000622_060 Hb_001754_120--Hb_001124_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.80366 33.6204 52.6102 53.91 1.52676 2.33009
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.2388 11.1615 11.4161 62.4356 108.767

CAGE analysis