Hb_000032_620

Information

Type -
Description -
Location Contig32: 463747-467902
Sequence    

Annotation

kegg
ID rcu:RCOM_1311830
description hypothetical protein
nr
ID XP_002518850.1
description hypothetical protein RCOM_1311830 [Ricinus communis]
swissprot
ID Q9XED8
description Auxin response factor 9 OS=Arabidopsis thaliana GN=ARF9 PE=1 SV=1
trembl
ID B9RYN1
description Auxin response factor OS=Ricinus communis GN=RCOM_1311830 PE=3 SV=1
Gene Ontology
ID GO:0005634
description auxin response factor 9-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33775: 463764-465304 , PASA_asmbl_33776: 464029-465304 , PASA_asmbl_33777: 463478-463913 , PASA_asmbl_33778: 465815-466447 , PASA_asmbl_33779: 465854-466102 , PASA_asmbl_33781: 466992-467971
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000032_620 0.0 - - hypothetical protein RCOM_1311830 [Ricinus communis]
2 Hb_086063_010 0.0999263189 - - soluble diacylglycerol acyltransferase [Ricinus communis]
3 Hb_000798_060 0.1020812623 transcription factor TF Family: PHD -
4 Hb_001220_030 0.1038708105 - - PREDICTED: BRCA1-A complex subunit Abraxas [Jatropha curcas]
5 Hb_001610_110 0.1041556923 - - PREDICTED: vacuolar protein sorting-associated protein 32 homolog 2 [Jatropha curcas]
6 Hb_005928_110 0.1066126003 - - PREDICTED: PRA1 family protein F2-like [Jatropha curcas]
7 Hb_164010_060 0.1071680304 - - PREDICTED: uncharacterized protein LOC105633115 [Jatropha curcas]
8 Hb_000059_210 0.1096964897 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001252_010 0.1107904923 - - hypothetical protein JCGZ_01389 [Jatropha curcas]
10 Hb_000523_040 0.1108015608 - - PREDICTED: auxin response factor 8 isoform X1 [Jatropha curcas]
11 Hb_003498_090 0.1147258998 - - hypothetical protein RCOM_0867850 [Ricinus communis]
12 Hb_004324_340 0.1158763641 - - conserved hypothetical protein [Ricinus communis]
13 Hb_006586_050 0.1177633164 - - PREDICTED: probable protein phosphatase 2C 39 [Jatropha curcas]
14 Hb_001288_080 0.1183932383 - - PREDICTED: probable protein phosphatase 2C 50 [Populus euphratica]
15 Hb_000352_090 0.1193864584 - - PREDICTED: syntaxin-22-like isoform X1 [Jatropha curcas]
16 Hb_008511_030 0.1193879571 - - guanine nucleotide-binding protein beta, putative [Ricinus communis]
17 Hb_052764_050 0.119787279 - - PREDICTED: vacuolar protein sorting-associated protein 28 homolog 2 [Jatropha curcas]
18 Hb_000291_190 0.1207623937 transcription factor TF Family: bZIP PREDICTED: transcription factor TGA3 [Jatropha curcas]
19 Hb_001655_070 0.1246352591 - - PREDICTED: chromatin structure-remodeling complex subunit RSC1 [Jatropha curcas]
20 Hb_000521_020 0.1249742249 - - PREDICTED: uncharacterized protein LOC105650319 [Jatropha curcas]

Gene co-expression network

sample Hb_000032_620 Hb_000032_620 Hb_086063_010 Hb_086063_010 Hb_000032_620--Hb_086063_010 Hb_000798_060 Hb_000798_060 Hb_000032_620--Hb_000798_060 Hb_001220_030 Hb_001220_030 Hb_000032_620--Hb_001220_030 Hb_001610_110 Hb_001610_110 Hb_000032_620--Hb_001610_110 Hb_005928_110 Hb_005928_110 Hb_000032_620--Hb_005928_110 Hb_164010_060 Hb_164010_060 Hb_000032_620--Hb_164010_060 Hb_086063_010--Hb_164010_060 Hb_031091_010 Hb_031091_010 Hb_086063_010--Hb_031091_010 Hb_033095_020 Hb_033095_020 Hb_086063_010--Hb_033095_020 Hb_086063_010--Hb_000798_060 Hb_001168_040 Hb_001168_040 Hb_086063_010--Hb_001168_040 Hb_000920_040 Hb_000920_040 Hb_000798_060--Hb_000920_040 Hb_008725_250 Hb_008725_250 Hb_000798_060--Hb_008725_250 Hb_015941_030 Hb_015941_030 Hb_000798_060--Hb_015941_030 Hb_004055_010 Hb_004055_010 Hb_000798_060--Hb_004055_010 Hb_002745_010 Hb_002745_010 Hb_001220_030--Hb_002745_010 Hb_000140_070 Hb_000140_070 Hb_001220_030--Hb_000140_070 Hb_000291_190 Hb_000291_190 Hb_001220_030--Hb_000291_190 Hb_124677_060 Hb_124677_060 Hb_001220_030--Hb_124677_060 Hb_000865_080 Hb_000865_080 Hb_001220_030--Hb_000865_080 Hb_000059_210 Hb_000059_210 Hb_001220_030--Hb_000059_210 Hb_001623_140 Hb_001623_140 Hb_001610_110--Hb_001623_140 Hb_052764_050 Hb_052764_050 Hb_001610_110--Hb_052764_050 Hb_004324_340 Hb_004324_340 Hb_001610_110--Hb_004324_340 Hb_001288_080 Hb_001288_080 Hb_001610_110--Hb_001288_080 Hb_000621_080 Hb_000621_080 Hb_001610_110--Hb_000621_080 Hb_086639_070 Hb_086639_070 Hb_001610_110--Hb_086639_070 Hb_000109_160 Hb_000109_160 Hb_005928_110--Hb_000109_160 Hb_009615_150 Hb_009615_150 Hb_005928_110--Hb_009615_150 Hb_005928_110--Hb_001610_110 Hb_005928_110--Hb_086639_070 Hb_003994_180 Hb_003994_180 Hb_005928_110--Hb_003994_180 Hb_005928_110--Hb_000621_080 Hb_003020_110 Hb_003020_110 Hb_164010_060--Hb_003020_110 Hb_004586_180 Hb_004586_180 Hb_164010_060--Hb_004586_180 Hb_006586_050 Hb_006586_050 Hb_164010_060--Hb_006586_050 Hb_007590_080 Hb_007590_080 Hb_164010_060--Hb_007590_080 Hb_007632_020 Hb_007632_020 Hb_164010_060--Hb_007632_020 Hb_063716_080 Hb_063716_080 Hb_164010_060--Hb_063716_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.6556 14.4017 3.5595 8.45046 10.3814 14.3853
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.8705 8.62081 6.05996 5.2876 1.07181

CAGE analysis