Hb_000033_020

Information

Type -
Description -
Location Contig33: 18541-20667
Sequence    

Annotation

kegg
ID rcu:RCOM_0385660
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_002533336.1
description pentatricopeptide repeat-containing protein, putative [Ricinus communis]
swissprot
ID Q9LU94
description Putative pentatricopeptide repeat-containing protein At3g25970 OS=Arabidopsis thaliana GN=PCMP-E46 PE=3 SV=2
trembl
ID B9T517
description Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis GN=RCOM_0385660 PE=4 SV=1
Gene Ontology
ID GO:0005515
description pentatricopeptide repeat-containing protein at3g25970

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34676: 18885-18988
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000033_020 0.0 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
2 Hb_000366_090 0.0809070085 - - PREDICTED: pentatricopeptide repeat-containing protein At4g32430, mitochondrial [Jatropha curcas]
3 Hb_000307_030 0.1013039408 - - PREDICTED: pentatricopeptide repeat-containing protein At5g40410, mitochondrial [Jatropha curcas]
4 Hb_168319_030 0.1015584728 - - PREDICTED: pentatricopeptide repeat-containing protein At5g66520-like [Jatropha curcas]
5 Hb_000117_090 0.1026793946 - - PREDICTED: uncharacterized protein LOC105633456 [Jatropha curcas]
6 Hb_004375_150 0.1031771262 - - PREDICTED: uncharacterized protein LOC105642574 [Jatropha curcas]
7 Hb_000009_450 0.1038798817 - - PREDICTED: pentatricopeptide repeat-containing protein At2g22410, mitochondrial-like [Jatropha curcas]
8 Hb_000696_150 0.1058069341 - - PREDICTED: pentatricopeptide repeat-containing protein At3g51320 [Jatropha curcas]
9 Hb_000679_090 0.1140581655 - - PREDICTED: pentatricopeptide repeat-containing protein At4g21065-like [Jatropha curcas]
10 Hb_027472_170 0.1149331637 - - hypothetical protein POPTR_0007s08080g [Populus trichocarpa]
11 Hb_004374_070 0.1184818961 - - PREDICTED: pentatricopeptide repeat-containing protein At2g13600-like [Jatropha curcas]
12 Hb_025557_030 0.1197909335 - - PREDICTED: pentatricopeptide repeat-containing protein At1g74600, chloroplastic [Jatropha curcas]
13 Hb_000574_350 0.1212436588 - - PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like [Jatropha curcas]
14 Hb_005015_070 0.1220713127 - - PREDICTED: pentatricopeptide repeat-containing protein At4g39530 [Jatropha curcas]
15 Hb_004607_030 0.1232128971 - - PREDICTED: pentatricopeptide repeat-containing protein At2g22410, mitochondrial [Jatropha curcas]
16 Hb_005188_020 0.1239200802 - - PREDICTED: pentatricopeptide repeat-containing protein At3g02330 [Jatropha curcas]
17 Hb_002878_020 0.125026333 - - mitochondrial carrier protein, putative [Ricinus communis]
18 Hb_000317_290 0.1251398189 - - PREDICTED: VQ motif-containing protein 31 [Jatropha curcas]
19 Hb_000002_050 0.1291545941 - - PREDICTED: pentatricopeptide repeat-containing protein At4g33990 [Jatropha curcas]
20 Hb_005228_070 0.1293293724 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g13230, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_000033_020 Hb_000033_020 Hb_000366_090 Hb_000366_090 Hb_000033_020--Hb_000366_090 Hb_000307_030 Hb_000307_030 Hb_000033_020--Hb_000307_030 Hb_168319_030 Hb_168319_030 Hb_000033_020--Hb_168319_030 Hb_000117_090 Hb_000117_090 Hb_000033_020--Hb_000117_090 Hb_004375_150 Hb_004375_150 Hb_000033_020--Hb_004375_150 Hb_000009_450 Hb_000009_450 Hb_000033_020--Hb_000009_450 Hb_000366_090--Hb_168319_030 Hb_000366_090--Hb_000117_090 Hb_000019_060 Hb_000019_060 Hb_000366_090--Hb_000019_060 Hb_000110_320 Hb_000110_320 Hb_000366_090--Hb_000110_320 Hb_000366_090--Hb_004375_150 Hb_027472_170 Hb_027472_170 Hb_000307_030--Hb_027472_170 Hb_016901_010 Hb_016901_010 Hb_000307_030--Hb_016901_010 Hb_000007_150 Hb_000007_150 Hb_000307_030--Hb_000007_150 Hb_000297_200 Hb_000297_200 Hb_000307_030--Hb_000297_200 Hb_000935_050 Hb_000935_050 Hb_000307_030--Hb_000935_050 Hb_002218_010 Hb_002218_010 Hb_000307_030--Hb_002218_010 Hb_168319_030--Hb_004375_150 Hb_168319_030--Hb_000019_060 Hb_168319_030--Hb_027472_170 Hb_168319_030--Hb_000117_090 Hb_021409_030 Hb_021409_030 Hb_168319_030--Hb_021409_030 Hb_000039_160 Hb_000039_160 Hb_000117_090--Hb_000039_160 Hb_008566_050 Hb_008566_050 Hb_000117_090--Hb_008566_050 Hb_000117_090--Hb_021409_030 Hb_000563_250 Hb_000563_250 Hb_000117_090--Hb_000563_250 Hb_004607_030 Hb_004607_030 Hb_004375_150--Hb_004607_030 Hb_025557_030 Hb_025557_030 Hb_004375_150--Hb_025557_030 Hb_004375_150--Hb_000009_450 Hb_000009_450--Hb_000117_090 Hb_141990_040 Hb_141990_040 Hb_000009_450--Hb_141990_040 Hb_012760_070 Hb_012760_070 Hb_000009_450--Hb_012760_070 Hb_000009_450--Hb_008566_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.73595 2.96061 0.929333 0.68912 1.10609 1.44933
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.47583 3.98142 4.69482 1.08837 1.15898

CAGE analysis