Hb_000033_050

Information

Type -
Description -
Location Contig33: 85746-89083
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000033_050 0.0 - - -
2 Hb_006499_010 0.0926489511 - - -
3 Hb_001930_070 0.1047766263 - - -
4 Hb_000163_290 0.1111608571 - - PREDICTED: nucleolar protein 16 [Jatropha curcas]
5 Hb_001186_060 0.1127500497 - - -
6 Hb_011716_040 0.1207381492 - - -
7 Hb_000371_110 0.1263712779 - - -
8 Hb_000567_200 0.1412944016 - - PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 [Jatropha curcas]
9 Hb_000117_040 0.1421719417 - - 30S ribosomal protein S6A [Hevea brasiliensis]
10 Hb_007849_040 0.1463456402 - - PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1-like [Vitis vinifera]
11 Hb_002783_230 0.1476422416 - - neutral/alkaline invertase [Manihot esculenta]
12 Hb_003428_110 0.1477375495 - - ARF2-B: ADP-ribosylation factor 2-B [Gossypium arboreum]
13 Hb_011930_010 0.1509839824 - - PREDICTED: outer envelope pore protein 24B, chloroplastic-like [Jatropha curcas]
14 Hb_003747_240 0.1524186089 transcription factor TF Family: RB conserved hypothetical protein [Ricinus communis]
15 Hb_000926_270 0.1543236937 - - PREDICTED: uncharacterized protein LOC105633003 [Jatropha curcas]
16 Hb_000472_040 0.1543327161 - - PREDICTED: uncharacterized protein LOC105650670 [Jatropha curcas]
17 Hb_000953_140 0.1575619376 transcription factor TF Family: Trihelix Duplicated homeodomain-like superfamily protein, putative [Theobroma cacao]
18 Hb_001158_030 0.1579296749 - - -
19 Hb_096962_020 0.1592737788 - - -
20 Hb_002924_050 0.1594657129 - - PREDICTED: uncharacterized protein LOC105629366 [Jatropha curcas]

Gene co-expression network

sample Hb_000033_050 Hb_000033_050 Hb_006499_010 Hb_006499_010 Hb_000033_050--Hb_006499_010 Hb_001930_070 Hb_001930_070 Hb_000033_050--Hb_001930_070 Hb_000163_290 Hb_000163_290 Hb_000033_050--Hb_000163_290 Hb_001186_060 Hb_001186_060 Hb_000033_050--Hb_001186_060 Hb_011716_040 Hb_011716_040 Hb_000033_050--Hb_011716_040 Hb_000371_110 Hb_000371_110 Hb_000033_050--Hb_000371_110 Hb_006499_010--Hb_001930_070 Hb_006499_010--Hb_000163_290 Hb_007245_090 Hb_007245_090 Hb_006499_010--Hb_007245_090 Hb_006499_010--Hb_001186_060 Hb_003747_240 Hb_003747_240 Hb_006499_010--Hb_003747_240 Hb_001930_070--Hb_001186_060 Hb_001930_070--Hb_007245_090 Hb_000014_100 Hb_000014_100 Hb_001930_070--Hb_000014_100 Hb_002924_050 Hb_002924_050 Hb_001930_070--Hb_002924_050 Hb_000117_040 Hb_000117_040 Hb_000163_290--Hb_000117_040 Hb_001518_020 Hb_001518_020 Hb_000163_290--Hb_001518_020 Hb_000163_290--Hb_003747_240 Hb_000163_290--Hb_000371_110 Hb_000163_290--Hb_001186_060 Hb_001186_060--Hb_000371_110 Hb_006189_010 Hb_006189_010 Hb_001186_060--Hb_006189_010 Hb_027556_010 Hb_027556_010 Hb_011716_040--Hb_027556_010 Hb_001158_030 Hb_001158_030 Hb_011716_040--Hb_001158_030 Hb_011716_040--Hb_006499_010 Hb_011716_040--Hb_001186_060 Hb_011716_040--Hb_000014_100 Hb_001433_170 Hb_001433_170 Hb_000371_110--Hb_001433_170 Hb_000371_110--Hb_000117_040 Hb_000371_110--Hb_006499_010 Hb_000138_040 Hb_000138_040 Hb_000371_110--Hb_000138_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.0093 3.21586 0.149698 0 7.06877 4.5828
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.43986 3.50535 5.04529 1.16066 0.164087

CAGE analysis