Hb_000033_060

Information

Type -
Description -
Location Contig33: 95592-96545
Sequence    

Annotation

kegg
ID pop:POPTR_0007s00300g
description POPTRDRAFT_819645; hypothetical protein
nr
ID XP_011005248.1
description PREDICTED: uncharacterized protein LOC105111554 isoform X1 [Populus euphratica]
swissprot
ID P46519
description Desiccation protectant protein Lea14 homolog OS=Glycine max PE=2 SV=1
trembl
ID A9PFS2
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0007s00300g PE=2 SV=1
Gene Ontology
ID GO:0009269
description late embryogenesis abundant group 2 isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34683: 95115-97411
cDNA
(Sanger)
(ID:Location)		 015_J05.ab1: 96103-97411

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000033_060 0.0 - - PREDICTED: uncharacterized protein LOC105111554 isoform X1 [Populus euphratica]
2 Hb_009193_130 0.1088639126 - - hypothetical protein RCOM_1620550 [Ricinus communis]
3 Hb_002627_060 0.1124852348 transcription factor TF Family: MYB Duplicated homeodomain-like superfamily protein, putative [Theobroma cacao]
4 Hb_000856_100 0.1137351705 - - PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4 [Jatropha curcas]
5 Hb_098315_100 0.1161749539 - - PREDICTED: uncharacterized protein LOC105636025 isoform X1 [Jatropha curcas]
6 Hb_002506_110 0.1326205547 - - PREDICTED: thaumatin-like protein 1b [Jatropha curcas]
7 Hb_002253_110 0.1381540782 - - cysteine desulfurylase, putative [Ricinus communis]
8 Hb_029464_010 0.1393641889 - - PREDICTED: zeatin O-glucosyltransferase-like [Jatropha curcas]
9 Hb_007158_030 0.1401179349 - - UDP-glucosyltransferase, putative [Ricinus communis]
10 Hb_000441_230 0.1409309472 - - unnamed protein product [Coffea canephora]
11 Hb_003360_020 0.1428335345 - - hypothetical protein POPTR_0016s07860g [Populus trichocarpa]
12 Hb_000155_080 0.1448429361 - - guanylate-binding family protein [Populus trichocarpa]
13 Hb_000172_610 0.1451632674 - - hypothetical protein POPTR_0017s02240g, partial [Populus trichocarpa]
14 Hb_000466_060 0.1476224624 - - phosphofructokinase [Hevea brasiliensis]
15 Hb_000603_200 0.1497784835 - - PREDICTED: myosin-15 [Jatropha curcas]
16 Hb_074961_010 0.1521482137 - - PREDICTED: leucine-rich repeat receptor-like protein kinase TDR [Jatropha curcas]
17 Hb_000172_530 0.156266018 - - PREDICTED: UBP1-associated protein 2B-like isoform X1 [Jatropha curcas]
18 Hb_005271_030 0.1570608687 - - copper-transporting atpase p-type, putative [Ricinus communis]
19 Hb_019654_070 0.158185506 - - PREDICTED: probable alpha-amylase 2 [Jatropha curcas]
20 Hb_001523_010 0.1589788564 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_25496 [Jatropha curcas]

Gene co-expression network

sample Hb_000033_060 Hb_000033_060 Hb_009193_130 Hb_009193_130 Hb_000033_060--Hb_009193_130 Hb_002627_060 Hb_002627_060 Hb_000033_060--Hb_002627_060 Hb_000856_100 Hb_000856_100 Hb_000033_060--Hb_000856_100 Hb_098315_100 Hb_098315_100 Hb_000033_060--Hb_098315_100 Hb_002506_110 Hb_002506_110 Hb_000033_060--Hb_002506_110 Hb_002253_110 Hb_002253_110 Hb_000033_060--Hb_002253_110 Hb_029464_010 Hb_029464_010 Hb_009193_130--Hb_029464_010 Hb_007158_030 Hb_007158_030 Hb_009193_130--Hb_007158_030 Hb_009193_130--Hb_000856_100 Hb_005271_030 Hb_005271_030 Hb_009193_130--Hb_005271_030 Hb_009193_130--Hb_098315_100 Hb_009193_130--Hb_002506_110 Hb_000172_610 Hb_000172_610 Hb_002627_060--Hb_000172_610 Hb_126669_010 Hb_126669_010 Hb_002627_060--Hb_126669_010 Hb_000155_080 Hb_000155_080 Hb_002627_060--Hb_000155_080 Hb_002627_060--Hb_009193_130 Hb_002627_060--Hb_098315_100 Hb_000270_400 Hb_000270_400 Hb_002627_060--Hb_000270_400 Hb_000856_100--Hb_098315_100 Hb_000856_100--Hb_002506_110 Hb_019654_070 Hb_019654_070 Hb_000856_100--Hb_019654_070 Hb_000856_100--Hb_005271_030 Hb_000856_100--Hb_000155_080 Hb_098315_100--Hb_019654_070 Hb_000376_150 Hb_000376_150 Hb_098315_100--Hb_000376_150 Hb_000365_350 Hb_000365_350 Hb_098315_100--Hb_000365_350 Hb_098315_100--Hb_000155_080 Hb_002506_110--Hb_000376_150 Hb_002506_110--Hb_098315_100 Hb_002506_110--Hb_005271_030 Hb_002506_110--Hb_007158_030 Hb_003360_020 Hb_003360_020 Hb_002253_110--Hb_003360_020 Hb_002769_040 Hb_002769_040 Hb_002253_110--Hb_002769_040 Hb_002253_110--Hb_000856_100 Hb_002253_110--Hb_009193_130 Hb_000117_020 Hb_000117_020 Hb_002253_110--Hb_000117_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1303.84 28.723 6.47613 41.1576 686.241 1488.25
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
351.832 177.816 264.891 30.3836 2.15465

CAGE analysis