Hb_000034_040

Information

Type -
Description -
Location Contig34: 89722-101032
Sequence    

Annotation

kegg
ID rcu:RCOM_0741740
description histidyl-tRNA synthetase, putative (EC:6.1.1.21)
nr
ID XP_012076990.1
description PREDICTED: histidine--tRNA ligase [Jatropha curcas]
swissprot
ID P93422
description Histidine--tRNA ligase OS=Oryza sativa subsp. japonica GN=Os05g0150900 PE=2 SV=2
trembl
ID A0A067LMG6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17211 PE=3 SV=1
Gene Ontology
ID GO:0005737
description histidine--trna ligase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35472: 91245-91671 , PASA_asmbl_35474: 99593-99975
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000034_040 0.0 - - PREDICTED: histidine--tRNA ligase [Jatropha curcas]
2 Hb_006915_070 0.0616130346 - - hypothetical protein CAPTEDRAFT_111329, partial [Capitella teleta]
3 Hb_015884_030 0.0648895668 - - PREDICTED: uncharacterized protein LOC105647778 isoform X1 [Jatropha curcas]
4 Hb_012799_030 0.0682256676 - - PREDICTED: pentatricopeptide repeat-containing protein At1g55630-like [Jatropha curcas]
5 Hb_003938_080 0.077217036 - - PREDICTED: uncharacterized protein LOC105644554 [Jatropha curcas]
6 Hb_009411_010 0.0772257918 - - PREDICTED: uncharacterized protein LOC105645272 [Jatropha curcas]
7 Hb_002681_070 0.079929508 - - PREDICTED: uncharacterized protein LOC105633833 isoform X1 [Jatropha curcas]
8 Hb_000796_040 0.0845121207 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
9 Hb_000856_110 0.0867124043 - - PREDICTED: uncharacterized protein LOC105640477 isoform X2 [Jatropha curcas]
10 Hb_010710_070 0.0872011767 - - PREDICTED: protein TOC75-3, chloroplastic-like [Populus euphratica]
11 Hb_002276_060 0.0875661349 - - hypothetical protein CISIN_1g002019mg [Citrus sinensis]
12 Hb_007416_160 0.0876283333 - - PREDICTED: centromere-associated protein E isoform X1 [Nelumbo nucifera]
13 Hb_005181_110 0.0878514999 - - PREDICTED: FIP1[V]-like protein [Jatropha curcas]
14 Hb_003544_100 0.088625729 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g59900 [Jatropha curcas]
15 Hb_009503_030 0.0902937511 - - protein dimerization, putative [Ricinus communis]
16 Hb_000101_240 0.0902976132 desease resistance Gene Name: NB-ARC putative disease resistance gene NBS-LRR family protein [Populus trichocarpa]
17 Hb_028912_050 0.0908796526 - - PREDICTED: calmodulin-interacting protein 111 isoform X2 [Jatropha curcas]
18 Hb_002909_050 0.0912031775 - - conserved hypothetical protein [Ricinus communis]
19 Hb_048476_180 0.0917380658 - - PREDICTED: nuclear pore complex protein NUP155 [Jatropha curcas]
20 Hb_001675_180 0.0933251014 - - PREDICTED: golgin candidate 5 [Jatropha curcas]

Gene co-expression network

sample Hb_000034_040 Hb_000034_040 Hb_006915_070 Hb_006915_070 Hb_000034_040--Hb_006915_070 Hb_015884_030 Hb_015884_030 Hb_000034_040--Hb_015884_030 Hb_012799_030 Hb_012799_030 Hb_000034_040--Hb_012799_030 Hb_003938_080 Hb_003938_080 Hb_000034_040--Hb_003938_080 Hb_009411_010 Hb_009411_010 Hb_000034_040--Hb_009411_010 Hb_002681_070 Hb_002681_070 Hb_000034_040--Hb_002681_070 Hb_006915_070--Hb_002681_070 Hb_000345_170 Hb_000345_170 Hb_006915_070--Hb_000345_170 Hb_000116_180 Hb_000116_180 Hb_006915_070--Hb_000116_180 Hb_008785_040 Hb_008785_040 Hb_006915_070--Hb_008785_040 Hb_000856_110 Hb_000856_110 Hb_006915_070--Hb_000856_110 Hb_015884_030--Hb_003938_080 Hb_003544_100 Hb_003544_100 Hb_015884_030--Hb_003544_100 Hb_015884_030--Hb_009411_010 Hb_000010_180 Hb_000010_180 Hb_015884_030--Hb_000010_180 Hb_006915_060 Hb_006915_060 Hb_015884_030--Hb_006915_060 Hb_000201_110 Hb_000201_110 Hb_012799_030--Hb_000201_110 Hb_000193_310 Hb_000193_310 Hb_012799_030--Hb_000193_310 Hb_007416_160 Hb_007416_160 Hb_012799_030--Hb_007416_160 Hb_006711_100 Hb_006711_100 Hb_012799_030--Hb_006711_100 Hb_000803_260 Hb_000803_260 Hb_012799_030--Hb_000803_260 Hb_003938_080--Hb_009411_010 Hb_003216_080 Hb_003216_080 Hb_003938_080--Hb_003216_080 Hb_003938_080--Hb_003544_100 Hb_000101_240 Hb_000101_240 Hb_003938_080--Hb_000101_240 Hb_000502_050 Hb_000502_050 Hb_003938_080--Hb_000502_050 Hb_009411_010--Hb_003544_100 Hb_009411_010--Hb_000101_240 Hb_001797_050 Hb_001797_050 Hb_009411_010--Hb_001797_050 Hb_048476_180 Hb_048476_180 Hb_009411_010--Hb_048476_180 Hb_009411_010--Hb_000502_050 Hb_002681_070--Hb_008785_040 Hb_001019_190 Hb_001019_190 Hb_002681_070--Hb_001019_190 Hb_000819_080 Hb_000819_080 Hb_002681_070--Hb_000819_080 Hb_005496_130 Hb_005496_130 Hb_002681_070--Hb_005496_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.76435 7.55659 4.86456 4.62049 13.4173 14.5334
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.36423 6.97922 9.89822 5.94026 12.5361

CAGE analysis